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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACSM2B is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
184.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
918.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
668.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
667.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
667.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
654.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
652.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
596.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
592.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
579.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
526.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
509.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
505.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
498.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
481.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
477.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
472.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
465.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
462.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
458.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
456.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
441.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
438.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
437.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
435.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
429.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
420.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
415.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
409.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
408.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
397.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
394.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
394.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
386.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
385.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
377.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
375.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
372.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
371.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
371.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
367.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
361.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
358.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
357.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
355.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
355.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
354.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
353.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
349.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
348.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
348.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
346.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
344.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
341.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
338.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
337.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
333.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
331.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
330.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
329.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
325.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
322.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
318.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
317.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
316.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
306.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
304.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
302.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
297.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
295.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
292.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
285.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
282.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
282.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
282.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
281.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
281.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
278.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
276.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
275.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
272.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
270.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
270.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
269.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
268.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
268.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
264.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
262.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
262.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
262.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
261.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
260.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
259.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
256.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
254.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
254.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
252.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
247.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
246.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
245.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
244.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
242.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
242.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
242.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
239.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
237.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
237.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
236.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
235.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
234.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
234.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
233.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
233.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
230.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
229.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
229.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
227.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
227.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
226.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
226.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
225.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
225.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
225.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
224.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
222.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
222.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
220.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
217.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
216.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
216.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
215.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
214.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
214.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
213.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
213.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
212.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
212.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
211.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
211.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
210.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
209.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
208.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
207.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
207.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
206.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
204.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
204.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
204.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
202.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
201.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
199.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
198.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
192.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
191.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
191.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
191.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
191.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
190.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
190.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
190.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
190.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
187.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
183.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
182.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
182.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
182.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
181.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
178.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
176.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
175.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
174.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
174.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
174.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
174.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
170.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
168.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
167.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
166.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
165.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
165.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
165.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
165.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
163.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
162.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
160.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
159.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
158.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
158.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
156.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
152.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
151.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
150.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
150.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
149.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
146.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
145.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
141.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
139.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
139.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
139.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
136.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
134.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
134.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
134.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
134.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
132.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
131.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
130.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
130.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
130.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
129.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
128.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
128.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
128.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
125.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
124.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
124.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
123.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
121.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
120.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
119.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
119.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
119.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
118.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
117.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
117.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
115.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
115.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
115.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
114.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
112.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
111.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
109.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
107.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
106.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
106.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
104.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
103.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
103.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
102.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
102.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
101.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
100.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
100.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
98.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
97.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
97.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
95.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
95.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
94.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
91.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
89.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
85.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
85.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
84.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
84.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
81.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
81.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
80.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
76.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
72.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
71.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
71.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
71.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
70.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
68.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
62.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
60.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
60.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
60.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
59.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
59.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
58.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
56.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
55.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
55.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
53.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
53.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
50.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
49.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
49.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
44.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
44.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
34.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACSM2B is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.7
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
386.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
358.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
350.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
322.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
296.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
265.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
260.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
254.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
220.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
218.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
208.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
205.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
204.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
203.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
200.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
198.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
197.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
191.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
191.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
189.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
187.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
184.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
184.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
182.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
182.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
181.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
180.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
177.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
173.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
170.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
169.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
169.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
168.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
166.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
166.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
166.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
165.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
164.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
164.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
162.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
150.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
150.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
149.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
148.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
148.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
148.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
147.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
146.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
145.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
145.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
145.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
144.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
143.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
143.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
140.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
139.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
138.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
136.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
134.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
134.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
132.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
132.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
131.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
130.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
130.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
129.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
128.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
127.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
127.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
124.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
124.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
121.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
120.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
117.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
117.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
117.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
116.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
115.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
115.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
108.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
107.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
106.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
106.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
105.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
104.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
101.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
100.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
99.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
99.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
99.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
97.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
93.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
91.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
91.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
90.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
90.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
89.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
87.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
86.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
85.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
84.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
83.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
83.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
82.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
81.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
81.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
80.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
80.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
79.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
76.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
75.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
75.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
75.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
75.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
74.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
73.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
73.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
69.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
68.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
67.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
66.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
65.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
65.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
64.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
64.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
64.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
61.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
60.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
60.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
59.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
57.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
56.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
52.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
52.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
52.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
47.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
47.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
45.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
342
Normal
1.2
452
Normal
1.1
222
Normal
1.0
746
Normal
1.0
911
Tumor
1.0
616
Normal
1.0
695
Tumor
1.0
938
Normal
0.9
534
Normal
0.9
664
Normal
0.9
426
Normal
0.9
298
Normal
0.9
132
Normal
0.9
862
Normal
0.9
513
Tumor
0.9
572
Normal
0.9
615
Tumor
0.9
394
Normal
0.9
564
Normal
0.9
867
Tumor
0.9
332
Normal
0.9
482
Normal
0.9
172
Normal
0.9
742
Normal
0.8
128
Normal
0.8
568
Normal
0.8
744
Normal
0.8
636
Normal
0.8
148
Normal
0.8
365
Tumor
0.8
922
Normal
0.8
546
Normal
0.8
352
Normal
0.8
1032
Normal
0.8
448
Normal
0.8
196
Normal
0.8
488
Normal
0.8
462
Normal
0.8
882
Normal
0.8
878
Normal
0.8
1041
Tumor
0.8
786
Normal
0.8
361
Tumor
0.7
824
Normal
0.7
982
Normal
0.7
414
Normal
0.7
756
Normal
0.7
356
Normal
0.7
388
Normal
0.7
358
Normal
0.7
142
Normal
0.7
915
Tumor
0.7
884
Normal
0.7
186
Normal
0.7
714
Normal
0.7
366
Normal
0.7
278
Normal
0.7
111
Normal
0.7
968
Normal
0.7
376
Normal
0.7
912
Normal
0.7
515
Tumor
0.7
723
Tumor
0.7
357
Tumor
0.7
716
Normal
0.7
465
Tumor
0.6
696
Normal
0.6
232
Normal
0.6
914
Normal
0.6
1022
Normal
0.6
428
Normal
0.6
864
Normal
0.6
778
Normal
0.6
362
Normal
0.6
868
Normal
0.6
738
Normal
0.6
686
Normal
0.6
272
Normal
0.6
648
Normal
0.6
218
Normal
0.6
666
Normal
0.6
1026
Normal
0.6
642
Normal
0.6
422
Normal
0.6
396
Normal
0.6
698
Normal
0.5
858
Normal
0.5
1044
Normal
0.5
722
Normal
0.5
1016
Normal
0.5
816
Normal
0.5
526
Normal
0.5
1014
Normal
0.5
162
Normal
0.5
818
Normal
0.5
262
Normal
0.5
328
Normal
0.5
873
Tumor
0.5
344
Normal
0.5
228
Normal
0.4
124
Normal
0.4
114
Normal
0.4
866
Normal
0.4
944
Normal
0.4
436
Normal
0.4
554
Normal
0.4
412
Normal
0.4
558
Normal
0.4
728
Normal
0.4
618
Normal
0.4
984
Normal
0.4
481
Tumor
0.4
514
Normal
0.4
258
Normal
0.4
432
Normal
0.4
916
Normal
0.4
464
Normal
0.3
662
Normal
0.3
267
Tumor
0.3
918
Normal
0.3
466
Normal
0.3
1045
Tumor
0.3
926
Normal
0.3
955
Tumor
0.3
981
Tumor
0.3
468
Normal
0.3
874
Normal
0.3
954
Normal
0.3
978
Normal
0.3
964
Normal
0.3
913
Tumor
0.3
487
Tumor
0.3
953
Tumor
0.3
484
Normal
0.3
1046
Normal
0.3
472
Normal
0.3
191
Tumor
0.2
785
Tumor
0.2
384
Normal
0.2
461
Tumor
0.2
354
Normal
0.2
741
Tumor
0.2
1042
Normal
0.2
231
Tumor
0.2
956
Normal
0.2
538
Normal
0.2
628
Normal
0.2
314
Normal
0.2
958
Normal
0.2
952
Normal
0.2
715
Tumor
0.2
451
Tumor
0.2
446
Normal
0.2
138
Normal
0.2
456
Normal
0.1
494
Normal
0.1
286
Normal
0.1
571
Tumor
0.1
392
Normal
0.1
312
Normal
0.1
393
Tumor
0.1
212
Normal
0.1
161
Tumor
0.1
528
Normal
0.1
563
Tumor
0.1
557
Tumor
0.1
721
Tumor
0.1
444
Normal
0.1
416
Normal
0.1
857
Tumor
0.1
268
Normal
0.0
1028
Normal
0.0
424
Normal
0.0
112
Tumor
0.0
663
Tumor
0.0
364
Normal
0.0
368
Normal
0.0
188
Normal
0.0
672
Normal
-0.1
141
Tumor
-0.1
224
Normal
-0.1
423
Tumor
-0.1
976
Normal
-0.1
113
Tumor
-0.1
524
Normal
-0.1
192
Normal
-0.1
861
Tumor
-0.1
1013
Tumor
-0.1
386
Normal
-0.1
136
Normal
-0.1
498
Normal
-0.1
261
Tumor
-0.2
685
Tumor
-0.2
146
Normal
-0.2
777
Tumor
-0.2
966
Normal
-0.2
883
Tumor
-0.2
925
Tumor
-0.2
126
Normal
-0.2
1015
Tumor
-0.2
474
Normal
-0.2
477
Tumor
-0.2
516
Normal
-0.2
434
Normal
-0.2
415
Tumor
-0.2
137
Tumor
-0.2
341
Tumor
-0.3
445
Tumor
-0.3
574
Normal
-0.3
411
Tumor
-0.3
863
Tumor
-0.3
217
Tumor
-0.3
127
Tumor
-0.4
327
Tumor
-0.4
937
Tumor
-0.4
145
Tumor
-0.4
518
Normal
-0.4
533
Tumor
-0.4
185
Tumor
-0.4
433
Tumor
-0.4
187
Tumor
-0.4
478
Normal
-0.4
214
Normal
-0.5
755
Tumor
-0.5
823
Tumor
-0.5
647
Tumor
-0.5
171
Tumor
-0.5
852
Normal
-0.6
353
Tumor
-0.6
713
Tumor
-0.6
284
Normal
-0.6
435
Tumor
-0.6
355
Tumor
-0.6
297
Tumor
-0.6
492
Normal
-0.7
553
Tumor
-0.7
536
Normal
-0.7
271
Tumor
-0.7
473
Tumor
-0.7
963
Tumor
-0.7
665
Tumor
-0.7
977
Tumor
-0.7
745
Tumor
-0.7
431
Tumor
-0.7
635
Tumor
-0.7
924
Normal
-0.7
421
Tumor
-0.8
1031
Tumor
-0.8
1043
Tumor
-0.8
483
Tumor
-0.8
383
Tumor
-0.8
427
Tumor
-0.8
641
Tumor
-0.8
617
Tumor
-0.9
123
Tumor
-0.9
195
Tumor
-0.9
387
Tumor
-0.9
447
Tumor
-0.9
881
Tumor
-1.0
943
Tumor
-1.0
525
Tumor
-1.1
277
Tumor
-1.1
443
Tumor
-1.1
455
Tumor
-1.1
921
Tumor
-1.1
493
Tumor
-1.1
221
Tumor
-1.2
814
Normal
-1.2
724
Normal
-1.2
813
Tumor
-1.2
1021
Tumor
-1.2
227
Tumor
-1.3
1025
Tumor
-1.3
463
Tumor
-1.3
375
Tumor
-1.4
223
Tumor
-1.4
135
Tumor
-1.5
877
Tumor
-1.5
395
Tumor
-1.5
727
Tumor
-1.5
851
Tumor
-1.5
737
Tumor
-1.5
313
Tumor
-1.5
351
Tumor
-1.5
413
Tumor
-1.5
567
Tumor
-1.5
527
Tumor
-1.5
917
Tumor
-1.5
257
Tumor
-1.6
865
Tumor
-1.6
497
Tumor
-1.6
343
Tumor
-1.6
391
Tumor
-1.6
125
Tumor
-1.6
491
Tumor
-1.7
957
Tumor
-1.7
367
Tumor
-1.7
467
Tumor
-1.7
1027
Tumor
-1.7
951
Tumor
-1.7
965
Tumor
-1.8
147
Tumor
-1.8
523
Tumor
-1.8
425
Tumor
-1.8
967
Tumor
-1.8
311
Tumor
-1.8
545
Tumor
-1.8
471
Tumor
-1.9
975
Tumor
-1.9
213
Tumor
-1.9
363
Tumor
-1.9
517
Tumor
-1.9
331
Tumor
-1.9
537
Tumor
-2.0
983
Tumor
-2.0
923
Tumor
-2.0
671
Tumor
-2.0
573
Tumor
-2.0
817
Tumor
-2.1
285
Tumor
-2.1
697
Tumor
-2.2
815
Tumor
-2.2
131
Tumor
-2.3
385
Tumor
-2.4
661
Tumor
-2.4
743
Tumor
-2.5
535
Tumor
-2.7
211
Tumor
-2.8
283
Tumor
-2.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.