MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:12.0 nTPM
GTEx:6.4 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:6.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.4
1870 Female, age 42, unknown 12.4
2219 Male, age 76, both hemispheres 11.9
2411 Female, age 72, unknown 11.9
1827 Male, age 72, unknown 11.5
1833 Male, age 53, unknown 11.0
1830 Male, age 51, unknown 10.4
2019 Male, age 18, unknown 9.5
2828 Female, age 72, unknown 8.9
2666 Male, age 74, left hemisphere 8.6
2586 Male, age 75, left hemisphere 7.8
Dorsal raphe nucleus
nTPM: 11.0
2750 Male, age 76, both hemispheres 11.8
2047 Male, age 72, unknown 11.4
2016 Female, age 72, unknown 10.9
2298 Female, age 72, unknown 10.7
1828 Male, age 53, unknown 10.1
Inferior colliculus
nTPM: 11.3
2097 Female, age 72, unknown 13.2
1848 Female, age 42, unknown 11.5
1890 Male, age 53, unknown 10.7
2849 Male, age 72, unknown 9.9
Median raphe nucleus
nTPM: 12.0
2220 Male, age 76, midline 12.0
Periaquaductal grey, anterior
nTPM: 11.2
1947 Male, age 18, unknown 13.8
2502 Female, age 75, unknown 10.3
1795 Male, age 51, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 10.9
1840 Male, age 53, unknown 11.5
1831 Male, age 72, unknown 10.9
2850 Male, age 76, both hemispheres 10.7
2464 Female, age 72, unknown 10.6
Periaquaductal grey, lateral
nTPM: 10.3
2053 Male, age 18, unknown 11.1
2272 Male, age 74, both hemispheres 10.5
2140 Male, age 76, both hemispheres 9.2
Pretectal area
nTPM: 11.8
1944 Female, age 72, unknown 14.1
1816 Male, age 51, unknown 13.1
2224 Female, age 72, unknown 12.2
2273 Male, age 74, both hemispheres 12.1
1815 Male, age 53, unknown 11.8
1817 Female, age 42, unknown 11.7
2007 Male, age 72, unknown 11.5
2667 Female, age 75, unknown 11.5
2825 Male, age 18, unknown 10.6
2316 Male, age 76, right hemisphere 10.5
2407 Male, age 75, both hemispheres 10.3
Red nucleus
nTPM: 9.5
1821 Female, age 72, unknown 11.8
2725 Female, age 75, unknown 11.1
1865 Male, age 51, unknown 10.3
1954 Female, age 42, unknown 10.1
1904 Male, age 53, unknown 10.0
2823 Male, age 76, right hemisphere 9.8
2503 Female, age 72, unknown 8.9
2227 Male, age 72, unknown 8.7
2769 Male, age 72, unknown 8.7
2785 Male, age 18, unknown 8.7
2588 Male, age 74, left hemisphere 8.0
2584 Male, age 75, left hemisphere 7.6
Substantia nigra
nTPM: 11.3
2241 Male, age 72, unknown 15.3
1889 Female, age 72, unknown 13.5
1916 Female, age 42, unknown 11.8
2409 Female, age 72, unknown 11.0
1941 Male, age 53, unknown 10.9
1851 Male, age 51, unknown 10.8
2590 Female, age 75, unknown 10.5
2583 Male, age 75, right hemisphere 10.0
2699 Male, age 18, unknown 9.8
2665 Male, age 74, both hemispheres 9.1
Superior colliculus
nTPM: 11.0
2087 Female, age 72, unknown 12.8
1913 Female, age 42, unknown 12.0
1895 Male, age 76, right hemisphere 11.9
2261 Male, age 18, unknown 11.9
2587 Male, age 74, left hemisphere 11.7
1796 Male, age 53, unknown 11.2
2668 Female, age 75, unknown 10.8
1839 Male, age 51, unknown 10.7
1995 Male, age 72, unknown 9.3
2664 Male, age 75, both hemispheres 7.7
Ventral tegmental area
nTPM: 11.1
2223 Female, age 72, unknown 11.9
2410 Female, age 72, unknown 11.2
2218 Male, age 76, both hemispheres 11.1
1915 Female, age 42, unknown 11.0
1942 Male, age 51, unknown 10.8
2021 Male, age 53, unknown 10.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 13.6
Min nTPM: 2.3
Std nTPM: 1.5
Median nTPM: 6.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 11.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 10.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 9.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 9.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 9.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 8.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 8.8
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 8.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 7.3
Sample A Female 13.3
Sample B Female 9.7
Sample C Male 13.2
Sample D Male 7.3
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.0
Sample A Female 11.8
Sample B Female 11.0
Sample C Male 8.0
Sample D Male 10.9
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 9.5
Min nTPM: 7.9
Sample B Female 7.9
Sample C Male 9.5
Sample D Male 9.3
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.5
Sample A Female 9.4
Sample B Female 7.5
Sample C Male 7.6
Sample D Male 8.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.6
Min nTPM: 6.0
Sample A Male 6.0
Sample B Male 7.6
Sample C Female 7.2
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
632516 Antisense, RP_040907_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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