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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FGFR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
209.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
195.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
174.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
169.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
169.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
149.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
131.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
123.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
121.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
118.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
115.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
106.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
105.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
100.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
96.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
93.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
82.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
82.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
76.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
76.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
76.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
74.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
73.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
73.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
72.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
70.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
70.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
70.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
69.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
68.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
68.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
66.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
64.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
62.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
62.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
61.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
61.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
61.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
60.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
57.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
57.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
54.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
54.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
53.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
48.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
41.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
40.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
39.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
30.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FGFR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
414.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
187.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
168.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
151.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
132.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
131.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
111.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
105.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
102.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
92.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
89.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
85.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
81.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
79.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
72.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
69.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
60.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
59.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
39.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
36.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.5
813
Tumor
1.5
131
Tumor
1.5
617
Tumor
1.3
413
Tumor
1.3
814
Normal
1.2
737
Tumor
1.2
223
Tumor
1.2
545
Tumor
1.0
695
Tumor
1.0
1025
Tumor
1.0
523
Tumor
0.9
297
Tumor
0.8
343
Tumor
0.8
445
Tumor
0.8
937
Tumor
0.8
425
Tumor
0.8
921
Tumor
0.8
455
Tumor
0.7
443
Tumor
0.7
478
Normal
0.7
493
Tumor
0.7
635
Tumor
0.6
471
Tumor
0.6
463
Tumor
0.6
573
Tumor
0.6
331
Tumor
0.6
983
Tumor
0.6
277
Tumor
0.6
873
Tumor
0.5
271
Tumor
0.5
517
Tumor
0.5
497
Tumor
0.5
385
Tumor
0.5
1031
Tumor
0.4
877
Tumor
0.4
147
Tumor
0.4
925
Tumor
0.4
977
Tumor
0.4
221
Tumor
0.4
967
Tumor
0.4
874
Normal
0.4
815
Tumor
0.4
755
Tumor
0.4
852
Normal
0.3
447
Tumor
0.3
363
Tumor
0.3
975
Tumor
0.3
527
Tumor
0.3
984
Normal
0.3
978
Normal
0.3
533
Tumor
0.3
187
Tumor
0.3
285
Tumor
0.3
536
Normal
0.3
713
Tumor
0.3
778
Normal
0.3
1042
Normal
0.3
955
Tumor
0.3
135
Tumor
0.2
126
Normal
0.2
671
Tumor
0.2
498
Normal
0.2
387
Tumor
0.2
563
Tumor
0.2
1016
Normal
0.2
538
Normal
0.2
943
Tumor
0.2
958
Normal
0.2
553
Tumor
0.2
823
Tumor
0.2
981
Tumor
0.2
332
Normal
0.2
516
Normal
0.2
546
Normal
0.2
786
Normal
0.2
938
Normal
0.2
857
Tumor
0.2
881
Tumor
0.2
213
Tumor
0.2
448
Normal
0.2
528
Normal
0.2
817
Tumor
0.2
923
Tumor
0.2
212
Normal
0.2
916
Normal
0.2
956
Normal
0.2
391
Tumor
0.2
912
Normal
0.2
571
Tumor
0.2
1014
Normal
0.2
314
Normal
0.1
355
Tumor
0.1
524
Normal
0.1
1021
Tumor
0.1
965
Tumor
0.1
1013
Tumor
0.1
647
Tumor
0.1
416
Normal
0.1
518
Normal
0.1
367
Tumor
0.1
567
Tumor
0.1
1032
Normal
0.1
952
Normal
0.1
421
Tumor
0.1
884
Normal
0.1
192
Normal
0.1
188
Normal
0.1
465
Tumor
0.1
721
Tumor
0.1
136
Normal
0.1
328
Normal
0.1
642
Normal
0.1
312
Normal
0.1
951
Tumor
0.1
146
Normal
0.1
913
Tumor
0.1
628
Normal
0.1
698
Normal
0.1
616
Normal
0.1
386
Normal
0.1
195
Tumor
0.1
124
Normal
0.1
444
Normal
0.1
278
Normal
0.1
618
Normal
0.0
514
Normal
0.0
128
Normal
0.0
964
Normal
0.0
224
Normal
0.0
924
Normal
0.0
393
Tumor
0.0
966
Normal
0.0
142
Normal
0.0
483
Tumor
0.0
111
Normal
0.0
756
Normal
0.0
968
Normal
0.0
487
Tumor
0.0
412
Normal
0.0
862
Normal
0.0
954
Normal
0.0
298
Normal
0.0
446
Normal
0.0
481
Tumor
0.0
436
Normal
0.0
1043
Tumor
0.0
957
Tumor
0.0
636
Normal
0.0
976
Normal
0.0
723
Tumor
0.0
214
Normal
0.0
777
Tumor
0.0
1022
Normal
0.0
415
Tumor
0.0
341
Tumor
0.0
222
Normal
0.0
132
Normal
0.0
284
Normal
0.0
356
Normal
0.0
494
Normal
0.0
526
Normal
0.0
557
Tumor
0.0
426
Normal
0.0
716
Normal
0.0
686
Normal
0.0
414
Normal
-0.1
866
Normal
-0.1
492
Normal
-0.1
362
Normal
-0.1
1028
Normal
-0.1
1044
Normal
-0.1
472
Normal
-0.1
217
Tumor
-0.1
1046
Normal
-0.1
944
Normal
-0.1
574
Normal
-0.1
114
Normal
-0.1
482
Normal
-0.1
431
Tumor
-0.1
268
Normal
-0.1
191
Tumor
-0.1
364
Normal
-0.1
863
Tumor
-0.1
572
Normal
-0.1
434
Normal
-0.1
742
Normal
-0.1
982
Normal
-0.1
354
Normal
-0.1
696
Normal
-0.1
785
Tumor
-0.1
922
Normal
-0.1
641
Tumor
-0.1
384
Normal
-0.1
138
Normal
-0.1
196
Normal
-0.1
926
Normal
-0.1
462
Normal
-0.1
432
Normal
-0.1
864
Normal
-0.1
311
Tumor
-0.1
1026
Normal
-0.1
232
Normal
-0.1
358
Normal
-0.1
352
Normal
-0.1
714
Normal
-0.1
424
Normal
-0.1
882
Normal
-0.1
366
Normal
-0.1
468
Normal
-0.1
728
Normal
-0.1
1045
Tumor
-0.1
534
Normal
-0.1
963
Tumor
-0.1
162
Normal
-0.1
145
Tumor
-0.1
327
Tumor
-0.1
428
Normal
-0.1
564
Normal
-0.1
918
Normal
-0.1
1015
Tumor
-0.1
127
Tumor
-0.1
745
Tumor
-0.1
484
Normal
-0.1
738
Normal
-0.1
878
Normal
-0.1
558
Normal
-0.1
137
Tumor
-0.1
456
Normal
-0.2
185
Tumor
-0.2
515
Tumor
-0.2
283
Tumor
-0.2
661
Tumor
-0.2
388
Normal
-0.2
351
Tumor
-0.2
535
Tumor
-0.2
722
Normal
-0.2
172
Normal
-0.2
474
Normal
-0.2
858
Normal
-0.2
262
Normal
-0.2
394
Normal
-0.2
746
Normal
-0.2
917
Tumor
-0.2
816
Normal
-0.2
868
Normal
-0.2
422
Normal
-0.2
344
Normal
-0.2
396
Normal
-0.2
818
Normal
-0.2
148
Normal
-0.2
461
Tumor
-0.2
744
Normal
-0.2
357
Tumor
-0.2
161
Tumor
-0.2
883
Tumor
-0.2
554
Normal
-0.2
464
Normal
-0.2
112
Tumor
-0.2
664
Normal
-0.2
186
Normal
-0.2
342
Normal
-0.2
125
Tumor
-0.2
376
Normal
-0.2
353
Tumor
-0.2
466
Normal
-0.3
123
Tumor
-0.3
435
Tumor
-0.3
258
Normal
-0.3
914
Normal
-0.3
697
Tumor
-0.3
392
Normal
-0.3
272
Normal
-0.3
672
Normal
-0.3
218
Normal
-0.3
568
Normal
-0.3
865
Tumor
-0.3
824
Normal
-0.3
113
Tumor
-0.3
491
Tumor
-0.3
477
Tumor
-0.3
286
Normal
-0.3
648
Normal
-0.3
627
Tumor
-0.3
228
Normal
-0.3
313
Tumor
-0.4
537
Tumor
-0.4
488
Normal
-0.4
662
Normal
-0.4
368
Normal
-0.4
395
Tumor
-0.4
666
Normal
-0.4
433
Tumor
-0.4
411
Tumor
-0.4
1027
Tumor
-0.4
953
Tumor
-0.4
663
Tumor
-0.4
525
Tumor
-0.4
383
Tumor
-0.4
423
Tumor
-0.4
473
Tumor
-0.5
727
Tumor
-0.5
1041
Tumor
-0.5
615
Tumor
-0.5
171
Tumor
-0.5
231
Tumor
-0.5
375
Tumor
-0.5
715
Tumor
-0.6
685
Tumor
-0.6
261
Tumor
-0.6
141
Tumor
-0.6
867
Tumor
-0.6
724
Normal
-0.6
911
Tumor
-0.6
452
Normal
-0.6
227
Tumor
-0.6
467
Tumor
-0.6
211
Tumor
-0.6
513
Tumor
-0.7
427
Tumor
-0.7
665
Tumor
-0.7
851
Tumor
-0.7
365
Tumor
-0.7
257
Tumor
-0.7
741
Tumor
-0.7
451
Tumor
-0.8
361
Tumor
-0.8
915
Tumor
-0.9
861
Tumor
-0.9
267
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
