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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GOLGA5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
59.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
52.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
51.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
49.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
47.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
43.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
39.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
39.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
37.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
34.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
30.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
30.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
30.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
29.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
29.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
25.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
21.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GOLGA5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.3
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
71.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
45.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
33.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.2
257
Tumor
1.1
533
Tumor
1.0
1027
Tumor
0.9
911
Tumor
0.8
863
Tumor
0.8
813
Tumor
0.7
553
Tumor
0.6
497
Tumor
0.6
617
Tumor
0.6
981
Tumor
0.6
697
Tumor
0.6
261
Tumor
0.6
227
Tumor
0.5
1043
Tumor
0.5
471
Tumor
0.5
481
Tumor
0.5
357
Tumor
0.5
823
Tumor
0.5
685
Tumor
0.5
917
Tumor
0.5
411
Tumor
0.5
1015
Tumor
0.4
383
Tumor
0.4
967
Tumor
0.4
713
Tumor
0.4
135
Tumor
0.4
145
Tumor
0.4
755
Tumor
0.4
363
Tumor
0.4
913
Tumor
0.4
285
Tumor
0.4
745
Tumor
0.4
937
Tumor
0.4
814
Normal
0.4
724
Normal
0.4
857
Tumor
0.3
953
Tumor
0.3
1041
Tumor
0.3
515
Tumor
0.3
536
Normal
0.3
473
Tumor
0.3
865
Tumor
0.3
524
Normal
0.3
311
Tumor
0.3
955
Tumor
0.3
647
Tumor
0.3
487
Tumor
0.3
283
Tumor
0.3
141
Tumor
0.3
526
Normal
0.3
721
Tumor
0.3
523
Tumor
0.3
221
Tumor
0.3
861
Tumor
0.3
743
Tumor
0.3
427
Tumor
0.2
528
Normal
0.2
728
Normal
0.2
968
Normal
0.2
963
Tumor
0.2
514
Normal
0.2
943
Tumor
0.2
641
Tumor
0.2
867
Tumor
0.2
777
Tumor
0.2
567
Tumor
0.2
461
Tumor
0.2
267
Tumor
0.2
488
Normal
0.2
493
Tumor
0.2
445
Tumor
0.2
873
Tumor
0.2
975
Tumor
0.2
353
Tumor
0.2
817
Tumor
0.2
518
Normal
0.2
696
Normal
0.2
228
Normal
0.2
563
Tumor
0.2
443
Tumor
0.2
231
Tumor
0.2
964
Normal
0.2
1021
Tumor
0.2
558
Normal
0.2
883
Tumor
0.2
918
Normal
0.2
977
Tumor
0.2
868
Normal
0.2
328
Normal
0.2
534
Normal
0.2
1026
Normal
0.2
984
Normal
0.1
557
Tumor
0.1
954
Normal
0.1
958
Normal
0.1
545
Tumor
0.1
413
Tumor
0.1
741
Tumor
0.1
131
Tumor
0.1
922
Normal
0.1
951
Tumor
0.1
327
Tumor
0.1
554
Normal
0.1
232
Normal
0.1
727
Tumor
0.1
513
Tumor
0.1
474
Normal
0.1
858
Normal
0.1
722
Normal
0.1
351
Tumor
0.1
636
Normal
0.1
786
Normal
0.1
1014
Normal
0.1
211
Tumor
0.1
284
Normal
0.1
343
Tumor
0.1
663
Tumor
0.1
286
Normal
0.1
944
Normal
0.1
535
Tumor
0.1
218
Normal
0.1
546
Normal
0.1
142
Normal
0.1
952
Normal
0.1
573
Tumor
0.1
924
Normal
0.1
756
Normal
0.1
1044
Normal
0.1
494
Normal
0.1
1028
Normal
0.1
572
Normal
0.1
642
Normal
0.1
1042
Normal
0.1
978
Normal
0.1
482
Normal
0.1
223
Tumor
0.1
492
Normal
0.1
484
Normal
0.1
723
Tumor
0.1
412
Normal
0.1
187
Tumor
0.1
395
Tumor
0.1
448
Normal
0.1
564
Normal
0.1
864
Normal
0.1
976
Normal
0.1
297
Tumor
0.1
364
Normal
0.1
778
Normal
0.1
1045
Tumor
0.0
191
Tumor
0.0
368
Normal
0.0
698
Normal
0.0
926
Normal
0.0
212
Normal
0.0
125
Tumor
0.0
738
Normal
0.0
956
Normal
0.0
966
Normal
0.0
746
Normal
0.0
478
Normal
0.0
416
Normal
0.0
262
Normal
0.0
498
Normal
0.0
361
Tumor
0.0
447
Tumor
0.0
983
Tumor
0.0
1016
Normal
0.0
878
Normal
0.0
463
Tumor
0.0
415
Tumor
0.0
462
Normal
0.0
884
Normal
0.0
537
Tumor
0.0
912
Normal
0.0
615
Tumor
0.0
852
Normal
0.0
616
Normal
0.0
1022
Normal
0.0
356
Normal
0.0
456
Normal
0.0
258
Normal
0.0
538
Normal
0.0
882
Normal
0.0
938
Normal
0.0
982
Normal
0.0
816
Normal
0.0
866
Normal
0.0
785
Tumor
0.0
224
Normal
0.0
862
Normal
0.0
525
Tumor
0.0
574
Normal
0.0
824
Normal
0.0
137
Tumor
0.0
464
Normal
0.0
217
Tumor
0.0
451
Tumor
0.0
568
Normal
0.0
392
Normal
0.0
877
Tumor
0.0
268
Normal
0.0
714
Normal
0.0
618
Normal
0.0
195
Tumor
0.0
112
Tumor
0.0
455
Tumor
0.0
874
Normal
0.0
433
Tumor
0.0
916
Normal
0.0
1025
Tumor
0.0
628
Normal
0.0
393
Tumor
0.0
881
Tumor
0.0
472
Normal
0.0
665
Tumor
-0.1
136
Normal
-0.1
1046
Normal
-0.1
686
Normal
-0.1
422
Normal
-0.1
737
Tumor
-0.1
138
Normal
-0.1
431
Tumor
-0.1
277
Tumor
-0.1
214
Normal
-0.1
516
Normal
-0.1
815
Tumor
-0.1
468
Normal
-0.1
367
Tumor
-0.1
387
Tumor
-0.1
213
Tumor
-0.1
672
Normal
-0.1
384
Normal
-0.1
132
Normal
-0.1
452
Normal
-0.1
661
Tumor
-0.1
627
Tumor
-0.1
695
Tumor
-0.1
386
Normal
-0.1
1032
Normal
-0.1
434
Normal
-0.1
914
Normal
-0.1
466
Normal
-0.1
716
Normal
-0.1
344
Normal
-0.1
162
Normal
-0.1
444
Normal
-0.1
396
Normal
-0.1
923
Tumor
-0.1
314
Normal
-0.1
114
Normal
-0.1
662
Normal
-0.1
222
Normal
-0.1
185
Tumor
-0.1
391
Tumor
-0.1
921
Tumor
-0.2
365
Tumor
-0.2
467
Tumor
-0.2
298
Normal
-0.2
332
Normal
-0.2
742
Normal
-0.2
818
Normal
-0.2
664
Normal
-0.2
358
Normal
-0.2
352
Normal
-0.2
271
Tumor
-0.2
146
Normal
-0.2
128
Normal
-0.2
648
Normal
-0.2
188
Normal
-0.2
517
Tumor
-0.2
394
Normal
-0.2
111
Normal
-0.2
355
Tumor
-0.2
147
Tumor
-0.2
186
Normal
-0.2
376
Normal
-0.2
354
Normal
-0.2
426
Normal
-0.2
124
Normal
-0.2
278
Normal
-0.2
388
Normal
-0.2
925
Tumor
-0.2
965
Tumor
-0.2
435
Tumor
-0.2
436
Normal
-0.2
362
Normal
-0.2
196
Normal
-0.2
715
Tumor
-0.2
172
Normal
-0.2
1031
Tumor
-0.2
421
Tumor
-0.2
126
Normal
-0.2
1013
Tumor
-0.2
428
Normal
-0.2
424
Normal
-0.2
851
Tumor
-0.2
744
Normal
-0.2
446
Normal
-0.2
414
Normal
-0.3
148
Normal
-0.3
192
Normal
-0.3
432
Normal
-0.3
666
Normal
-0.3
483
Tumor
-0.3
312
Normal
-0.3
385
Tumor
-0.3
425
Tumor
-0.3
366
Normal
-0.3
423
Tumor
-0.4
341
Tumor
-0.4
571
Tumor
-0.4
272
Normal
-0.4
957
Tumor
-0.4
491
Tumor
-0.4
635
Tumor
-0.4
331
Tumor
-0.4
113
Tumor
-0.4
127
Tumor
-0.4
915
Tumor
-0.4
342
Normal
-0.5
375
Tumor
-0.5
171
Tumor
-0.5
671
Tumor
-0.5
477
Tumor
-0.6
313
Tumor
-0.6
123
Tumor
-0.7
161
Tumor
-0.7
465
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
