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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R5A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
123.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
108.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
103.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
80.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
79.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
77.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
77.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
76.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
74.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
73.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
71.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
70.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
68.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
68.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
67.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
65.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
65.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
64.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
63.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
61.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
61.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
61.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
59.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
59.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
59.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
59.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
58.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
58.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
56.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
56.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
56.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
54.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
54.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
54.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
54.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
53.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
53.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
52.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
51.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
51.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
50.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
48.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
48.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
46.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
45.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
44.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
44.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
43.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
43.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
42.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
41.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
41.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
41.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
37.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
35.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
33.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
31.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
30.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
26.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R5A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.1
Number of samples
231
Samples
Sample
Description
TPM
DO23516
0 years, male, NA, stage:3, dead, 20 days
151.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
143.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
137.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
134.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
119.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
115.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
113.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
113.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
108.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
104.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
104.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
104.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
101.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
101.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
100.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
99.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
97.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
97.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
93.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
92.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
91.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
91.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
90.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
88.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
87.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
86.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
86.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
86.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
83.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
83.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
82.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
81.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
81.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
79.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
79.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
78.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
76.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
75.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
75.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
74.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
74.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
74.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
73.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
73.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
73.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
70.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
69.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
69.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
68.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
68.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
67.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
67.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
66.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
66.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
65.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
65.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
65.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
65.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
64.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
64.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
64.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
63.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
62.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
62.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
60.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
60.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
60.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
59.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
59.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
59.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
58.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
58.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
57.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
57.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
57.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
57.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
56.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
56.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
56.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
55.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
53.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
52.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
52.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
52.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
50.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
50.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
50.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
48.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
48.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
47.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
47.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
47.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
46.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
46.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
46.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
46.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
45.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
45.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
45.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
44.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
44.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
43.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
43.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
40.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
40.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
40.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
39.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
37.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
35.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
33.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
30.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
29.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.0
147
Tumor
1.3
375
Tumor
1.1
635
Tumor
1.0
1041
Tumor
0.9
425
Tumor
0.9
1021
Tumor
0.8
745
Tumor
0.8
777
Tumor
0.8
525
Tumor
0.8
271
Tumor
0.8
491
Tumor
0.8
221
Tumor
0.8
1027
Tumor
0.7
112
Tumor
0.7
1031
Tumor
0.7
573
Tumor
0.7
277
Tumor
0.7
911
Tumor
0.7
921
Tumor
0.6
975
Tumor
0.6
863
Tumor
0.6
471
Tumor
0.6
515
Tumor
0.6
685
Tumor
0.6
523
Tumor
0.6
557
Tumor
0.5
865
Tumor
0.5
1025
Tumor
0.5
187
Tumor
0.5
481
Tumor
0.5
977
Tumor
0.5
957
Tumor
0.5
285
Tumor
0.5
433
Tumor
0.5
647
Tumor
0.5
493
Tumor
0.5
431
Tumor
0.5
445
Tumor
0.4
1043
Tumor
0.4
443
Tumor
0.4
857
Tumor
0.4
393
Tumor
0.4
737
Tumor
0.4
483
Tumor
0.4
343
Tumor
0.4
741
Tumor
0.4
411
Tumor
0.3
257
Tumor
0.3
131
Tumor
0.3
553
Tumor
0.3
881
Tumor
0.3
641
Tumor
0.3
135
Tumor
0.3
527
Tumor
0.3
125
Tumor
0.3
477
Tumor
0.3
357
Tumor
0.3
817
Tumor
0.3
915
Tumor
0.3
185
Tumor
0.3
823
Tumor
0.3
487
Tumor
0.3
571
Tumor
0.3
663
Tumor
0.3
813
Tumor
0.3
341
Tumor
0.3
715
Tumor
0.2
231
Tumor
0.2
113
Tumor
0.2
883
Tumor
0.2
913
Tumor
0.2
213
Tumor
0.2
867
Tumor
0.2
331
Tumor
0.2
755
Tumor
0.2
127
Tumor
0.2
297
Tumor
0.2
467
Tumor
0.2
955
Tumor
0.1
963
Tumor
0.1
671
Tumor
0.1
161
Tumor
0.1
873
Tumor
0.1
545
Tumor
0.1
421
Tumor
0.1
123
Tumor
0.1
695
Tumor
0.1
744
Normal
0.1
528
Normal
0.1
267
Tumor
0.1
195
Tumor
0.1
223
Tumor
0.1
981
Tumor
0.1
526
Normal
0.1
463
Tumor
0.1
461
Tumor
0.1
361
Tumor
0.1
778
Normal
0.1
363
Tumor
0.0
468
Normal
0.0
538
Normal
0.0
642
Normal
0.0
517
Tumor
0.0
636
Normal
0.0
851
Tumor
0.0
937
Tumor
0.0
743
Tumor
0.0
456
Normal
0.0
191
Tumor
0.0
415
Tumor
0.0
785
Tumor
0.0
878
Normal
0.0
497
Tumor
0.0
128
Normal
0.0
227
Tumor
0.0
952
Normal
0.0
738
Normal
0.0
665
Tumor
0.0
662
Normal
0.0
148
Normal
0.0
1013
Tumor
0.0
145
Tumor
0.0
422
Normal
0.0
1026
Normal
0.0
332
Normal
0.0
261
Tumor
0.0
721
Tumor
0.0
455
Tumor
0.0
462
Normal
0.0
452
Normal
0.0
427
Tumor
0.0
568
Normal
-0.1
697
Tumor
-0.1
186
Normal
-0.1
426
Normal
-0.1
217
Tumor
-0.1
218
Normal
-0.1
376
Normal
-0.1
513
Tumor
-0.1
746
Normal
-0.1
482
Normal
-0.1
355
Tumor
-0.1
951
Tumor
-0.1
723
Tumor
-0.1
124
Normal
-0.1
814
Normal
-0.1
925
Tumor
-0.1
414
Normal
-0.1
664
Normal
-0.1
713
Tumor
-0.1
563
Tumor
-0.1
554
Normal
-0.1
196
Normal
-0.1
272
Normal
-0.1
384
Normal
-0.1
111
Normal
-0.1
742
Normal
-0.1
728
Normal
-0.1
672
Normal
-0.1
424
Normal
-0.1
298
Normal
-0.1
137
Tumor
-0.1
126
Normal
-0.1
574
Normal
-0.1
313
Tumor
-0.1
392
Normal
-0.1
465
Tumor
-0.1
648
Normal
-0.1
352
Normal
-0.1
564
Normal
-0.1
283
Tumor
-0.1
353
Tumor
-0.1
342
Normal
-0.1
954
Normal
-0.1
314
Normal
-0.1
558
Normal
-0.1
617
Tumor
-0.1
616
Normal
-0.1
162
Normal
-0.1
344
Normal
-0.1
1015
Tumor
-0.1
188
Normal
-0.1
866
Normal
-0.1
232
Normal
-0.1
877
Tumor
-0.2
1016
Normal
-0.2
518
Normal
-0.2
567
Tumor
-0.2
268
Normal
-0.2
413
Tumor
-0.2
1022
Normal
-0.2
914
Normal
-0.2
1046
Normal
-0.2
434
Normal
-0.2
1014
Normal
-0.2
861
Tumor
-0.2
912
Normal
-0.2
447
Tumor
-0.2
1028
Normal
-0.2
428
Normal
-0.2
358
Normal
-0.2
262
Normal
-0.2
278
Normal
-0.2
716
Normal
-0.2
572
Normal
-0.2
362
Normal
-0.2
432
Normal
-0.2
114
Normal
-0.2
388
Normal
-0.2
494
Normal
-0.2
618
Normal
-0.2
534
Normal
-0.2
228
Normal
-0.2
514
Normal
-0.2
172
Normal
-0.2
368
Normal
-0.2
546
Normal
-0.2
628
Normal
-0.2
884
Normal
-0.2
451
Tumor
-0.2
982
Normal
-0.2
386
Normal
-0.2
258
Normal
-0.2
474
Normal
-0.2
666
Normal
-0.2
444
Normal
-0.2
446
Normal
-0.2
385
Tumor
-0.2
923
Tumor
-0.2
882
Normal
-0.2
818
Normal
-0.2
698
Normal
-0.2
492
Normal
-0.2
1045
Tumor
-0.2
356
Normal
-0.2
864
Normal
-0.2
214
Normal
-0.2
627
Tumor
-0.2
984
Normal
-0.2
146
Normal
-0.2
524
Normal
-0.2
756
Normal
-0.2
396
Normal
-0.2
464
Normal
-0.2
816
Normal
-0.2
472
Normal
-0.2
312
Normal
-0.2
365
Tumor
-0.2
488
Normal
-0.2
537
Tumor
-0.2
132
Normal
-0.2
966
Normal
-0.2
142
Normal
-0.2
412
Normal
-0.2
366
Normal
-0.3
967
Tumor
-0.3
1042
Normal
-0.3
448
Normal
-0.3
383
Tumor
-0.3
786
Normal
-0.3
436
Normal
-0.3
917
Tumor
-0.3
924
Normal
-0.3
395
Tumor
-0.3
858
Normal
-0.3
364
Normal
-0.3
224
Normal
-0.3
435
Tumor
-0.3
498
Normal
-0.3
696
Normal
-0.3
1044
Normal
-0.3
815
Tumor
-0.3
661
Tumor
-0.3
222
Normal
-0.3
138
Normal
-0.3
862
Normal
-0.3
394
Normal
-0.3
478
Normal
-0.3
944
Normal
-0.3
824
Normal
-0.3
714
Normal
-0.3
136
Normal
-0.3
686
Normal
-0.3
171
Tumor
-0.3
466
Normal
-0.3
516
Normal
-0.3
874
Normal
-0.3
968
Normal
-0.3
416
Normal
-0.3
852
Normal
-0.3
328
Normal
-0.3
284
Normal
-0.3
192
Normal
-0.3
354
Normal
-0.3
943
Tumor
-0.3
868
Normal
-0.3
286
Normal
-0.3
212
Normal
-0.3
976
Normal
-0.3
141
Tumor
-0.4
938
Normal
-0.4
727
Tumor
-0.4
615
Tumor
-0.4
722
Normal
-0.4
484
Normal
-0.4
918
Normal
-0.4
964
Normal
-0.4
978
Normal
-0.4
536
Normal
-0.4
956
Normal
-0.4
922
Normal
-0.4
983
Tumor
-0.4
311
Tumor
-0.4
926
Normal
-0.4
916
Normal
-0.5
958
Normal
-0.5
953
Tumor
-0.5
473
Tumor
-0.5
387
Tumor
-0.5
1032
Normal
-0.5
423
Tumor
-0.5
965
Tumor
-0.5
391
Tumor
-0.6
211
Tumor
-0.6
351
Tumor
-0.7
327
Tumor
-0.7
367
Tumor
-0.8
724
Normal
-0.9
535
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
