We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM107B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
164.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
151.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
147.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
128.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
126.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
101.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
99.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
97.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
96.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
89.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
87.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
84.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
84.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
80.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
80.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
77.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
76.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
74.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
72.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
72.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
72.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
70.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
69.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
69.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
69.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
68.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
67.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
66.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
65.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
64.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
62.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
60.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
58.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
57.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
57.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
56.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
55.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
55.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
54.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
54.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
52.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
52.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
52.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
51.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
51.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
50.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
49.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
49.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
49.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
46.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
46.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
45.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
45.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
44.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
44.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
39.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
38.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
38.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
37.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
37.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
36.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
35.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
34.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
34.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
28.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
26.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
25.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM107B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.5
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
195.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
153.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
141.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
131.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
124.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
116.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
106.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
100.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
99.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
97.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
89.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
88.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
82.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
79.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
78.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
78.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
71.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
71.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
70.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
69.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
68.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
67.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
66.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
66.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
65.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
64.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
64.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
63.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
62.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
61.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
61.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
58.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
56.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
56.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
56.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
55.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
54.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
52.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
52.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
52.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
51.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
51.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
50.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
50.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
48.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
47.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
46.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
45.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
45.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
44.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
44.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
43.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
42.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
41.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
40.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
40.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
40.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
38.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
37.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
36.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
36.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
34.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.3
741
Tumor
0.9
911
Tumor
0.9
915
Tumor
0.9
663
Tumor
0.9
477
Tumor
0.8
695
Tumor
0.8
981
Tumor
0.8
813
Tumor
0.8
481
Tumor
0.8
714
Normal
0.8
715
Tumor
0.7
952
Normal
0.7
966
Normal
0.7
546
Normal
0.7
737
Tumor
0.7
977
Tumor
0.7
484
Normal
0.7
518
Normal
0.7
916
Normal
0.7
864
Normal
0.7
955
Tumor
0.7
861
Tumor
0.7
261
Tumor
0.7
1014
Normal
0.6
866
Normal
0.6
921
Tumor
0.6
478
Normal
0.6
554
Normal
0.6
498
Normal
0.6
978
Normal
0.6
728
Normal
0.6
1016
Normal
0.6
497
Tumor
0.6
938
Normal
0.6
451
Tumor
0.6
824
Normal
0.6
918
Normal
0.6
852
Normal
0.6
814
Normal
0.6
685
Tumor
0.6
746
Normal
0.5
944
Normal
0.5
912
Normal
0.5
954
Normal
0.5
1026
Normal
0.5
1028
Normal
0.5
698
Normal
0.5
862
Normal
0.5
494
Normal
0.5
984
Normal
0.5
528
Normal
0.5
472
Normal
0.5
778
Normal
0.5
1042
Normal
0.5
538
Normal
0.5
1022
Normal
0.5
968
Normal
0.5
882
Normal
0.5
982
Normal
0.5
756
Normal
0.5
228
Normal
0.5
716
Normal
0.5
1046
Normal
0.5
816
Normal
0.5
284
Normal
0.5
868
Normal
0.5
131
Tumor
0.5
958
Normal
0.5
873
Tumor
0.5
884
Normal
0.5
327
Tumor
0.5
786
Normal
0.5
777
Tumor
0.4
1032
Normal
0.4
956
Normal
0.4
914
Normal
0.4
448
Normal
0.4
926
Normal
0.4
286
Normal
0.4
628
Normal
0.4
412
Normal
0.4
878
Normal
0.4
976
Normal
0.4
742
Normal
0.4
527
Tumor
0.4
492
Normal
0.4
964
Normal
0.4
696
Normal
0.4
943
Tumor
0.4
874
Normal
0.4
723
Tumor
0.4
1041
Tumor
0.4
425
Tumor
0.4
922
Normal
0.4
616
Normal
0.4
697
Tumor
0.4
536
Normal
0.4
963
Tumor
0.4
474
Normal
0.4
1044
Normal
0.4
858
Normal
0.4
721
Tumor
0.4
534
Normal
0.4
515
Tumor
0.4
1015
Tumor
0.3
462
Normal
0.3
483
Tumor
0.3
924
Normal
0.3
951
Tumor
0.3
212
Normal
0.3
516
Normal
0.3
364
Normal
0.3
224
Normal
0.3
137
Tumor
0.3
823
Tumor
0.3
738
Normal
0.3
553
Tumor
0.3
482
Normal
0.3
416
Normal
0.3
415
Tumor
0.3
328
Normal
0.3
883
Tumor
0.3
523
Tumor
0.3
686
Normal
0.3
533
Tumor
0.3
161
Tumor
0.3
975
Tumor
0.3
488
Normal
0.3
1025
Tumor
0.3
465
Tumor
0.3
722
Normal
0.3
487
Tumor
0.2
572
Normal
0.2
455
Tumor
0.2
524
Normal
0.2
311
Tumor
0.2
514
Normal
0.2
863
Tumor
0.2
744
Normal
0.2
867
Tumor
0.2
558
Normal
0.2
362
Normal
0.2
635
Tumor
0.2
937
Tumor
0.2
493
Tumor
0.2
818
Normal
0.2
785
Tumor
0.2
447
Tumor
0.1
617
Tumor
0.1
1045
Tumor
0.1
537
Tumor
0.1
466
Normal
0.1
1031
Tumor
0.1
526
Normal
0.1
648
Normal
0.1
815
Tumor
0.1
755
Tumor
0.1
187
Tumor
0.1
356
Normal
0.1
913
Tumor
0.1
1043
Tumor
0.1
431
Tumor
0.1
135
Tumor
0.1
1021
Tumor
0.1
436
Normal
0.1
452
Normal
0.1
535
Tumor
0.1
126
Normal
0.1
298
Normal
0.1
917
Tumor
0.1
545
Tumor
0.1
136
Normal
0.1
461
Tumor
0.0
564
Normal
0.0
456
Normal
0.0
444
Normal
0.0
366
Normal
0.0
111
Normal
0.0
857
Tumor
0.0
268
Normal
0.0
223
Tumor
0.0
468
Normal
0.0
434
Normal
0.0
262
Normal
0.0
881
Tumor
0.0
142
Normal
0.0
365
Tumor
0.0
355
Tumor
0.0
272
Normal
0.0
471
Tumor
0.0
568
Normal
0.0
312
Normal
0.0
957
Tumor
0.0
662
Normal
0.0
421
Tumor
0.0
188
Normal
0.0
627
Tumor
0.0
664
Normal
0.0
923
Tumor
0.0
618
Normal
0.0
574
Normal
-0.1
642
Normal
-0.1
422
Normal
-0.1
384
Normal
-0.1
517
Tumor
-0.1
563
Tumor
-0.1
396
Normal
-0.1
132
Normal
-0.1
128
Normal
-0.1
376
Normal
-0.1
114
Normal
-0.1
424
Normal
-0.1
278
Normal
-0.1
138
Normal
-0.1
211
Tumor
-0.1
446
Normal
-0.1
386
Normal
-0.1
124
Normal
-0.1
967
Tumor
-0.1
258
Normal
-0.1
513
Tumor
-0.1
393
Tumor
-0.1
464
Normal
-0.1
368
Normal
-0.2
665
Tumor
-0.2
162
Normal
-0.2
214
Normal
-0.2
953
Tumor
-0.2
146
Normal
-0.2
222
Normal
-0.2
428
Normal
-0.2
414
Normal
-0.2
232
Normal
-0.2
817
Tumor
-0.2
1027
Tumor
-0.2
666
Normal
-0.2
432
Normal
-0.2
388
Normal
-0.2
353
Tumor
-0.2
231
Tumor
-0.2
615
Tumor
-0.2
148
Normal
-0.2
196
Normal
-0.2
352
Normal
-0.2
267
Tumor
-0.2
641
Tumor
-0.2
297
Tumor
-0.2
426
Normal
-0.2
392
Normal
-0.3
727
Tumor
-0.3
427
Tumor
-0.3
672
Normal
-0.3
394
Normal
-0.3
331
Tumor
-0.3
525
Tumor
-0.3
473
Tumor
-0.3
285
Tumor
-0.3
467
Tumor
-0.3
636
Normal
-0.3
443
Tumor
-0.3
865
Tumor
-0.3
141
Tumor
-0.3
925
Tumor
-0.3
647
Tumor
-0.3
123
Tumor
-0.3
172
Normal
-0.3
341
Tumor
-0.3
557
Tumor
-0.4
283
Tumor
-0.4
413
Tumor
-0.4
743
Tumor
-0.4
112
Tumor
-0.4
354
Normal
-0.4
363
Tumor
-0.4
218
Normal
-0.4
423
Tumor
-0.4
186
Normal
-0.4
195
Tumor
-0.4
433
Tumor
-0.4
313
Tumor
-0.4
332
Normal
-0.4
171
Tumor
-0.4
724
Normal
-0.4
383
Tumor
-0.4
344
Normal
-0.4
314
Normal
-0.4
983
Tumor
-0.5
491
Tumor
-0.5
113
Tumor
-0.5
145
Tumor
-0.5
375
Tumor
-0.5
358
Normal
-0.5
445
Tumor
-0.5
127
Tumor
-0.5
192
Normal
-0.5
567
Tumor
-0.6
385
Tumor
-0.6
342
Normal
-0.6
185
Tumor
-0.6
745
Tumor
-0.6
571
Tumor
-0.6
357
Tumor
-0.6
361
Tumor
-0.6
213
Tumor
-0.7
257
Tumor
-0.7
125
Tumor
-0.7
387
Tumor
-0.7
877
Tumor
-0.7
191
Tumor
-0.7
713
Tumor
-0.7
411
Tumor
-0.7
271
Tumor
-0.7
277
Tumor
-0.7
221
Tumor
-0.8
217
Tumor
-0.8
463
Tumor
-0.8
395
Tumor
-0.8
351
Tumor
-0.8
661
Tumor
-0.8
147
Tumor
-0.9
573
Tumor
-1.0
367
Tumor
-1.1
671
Tumor
-1.1
851
Tumor
-1.2
391
Tumor
-1.2
343
Tumor
-1.2
965
Tumor
-1.2
435
Tumor
-1.3
227
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
