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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC9A3R2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
158.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
427.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
412.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
401.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
391.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
386.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
383.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
377.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
370.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
366.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
363.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
360.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
356.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
353.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
346.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
339.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
337.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
325.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
325.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
320.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
319.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
316.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
316.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
312.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
305.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
303.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
301.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
301.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
294.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
294.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
294.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
290.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
287.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
286.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
286.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
285.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
282.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
280.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
278.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
277.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
276.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
274.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
269.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
269.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
269.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
266.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
264.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
261.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
258.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
258.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
257.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
253.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
252.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
252.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
250.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
249.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
249.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
244.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
244.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
243.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
241.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
240.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
240.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
240.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
239.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
237.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
234.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
234.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
233.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
232.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
232.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
231.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
231.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
231.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
228.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
226.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
226.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
225.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
223.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
223.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
220.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
220.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
219.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
218.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
216.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
215.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
214.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
213.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
213.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
211.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
211.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
208.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
207.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
204.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
203.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
203.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
202.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
202.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
202.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
201.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
200.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
199.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
198.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
198.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
196.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
196.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
195.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
194.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
193.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
193.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
193.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
192.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
190.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
189.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
188.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
188.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
188.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
187.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
187.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
184.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
183.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
183.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
182.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
181.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
181.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
178.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
178.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
178.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
177.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
177.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
176.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
176.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
176.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
175.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
174.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
173.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
173.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
172.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
172.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
169.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
168.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
168.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
168.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
166.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
165.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
165.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
164.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
163.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
163.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
162.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
162.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
162.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
160.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
160.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
160.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
160.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
159.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
159.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
157.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
155.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
155.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
153.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
152.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
151.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
150.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
150.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
149.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
148.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
148.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
148.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
148.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
147.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
146.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
146.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
145.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
144.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
144.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
144.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
143.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
142.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
142.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
141.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
140.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
140.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
140.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
140.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
139.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
138.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
138.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
137.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
137.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
136.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
136.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
136.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
134.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
134.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
133.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
133.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
133.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
132.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
132.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
132.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
132.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
131.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
130.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
130.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
128.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
128.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
127.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
127.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
127.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
126.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
125.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
124.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
124.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
124.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
123.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
122.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
121.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
121.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
120.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
120.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
119.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
118.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
117.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
116.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
116.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
116.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
115.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
115.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
114.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
114.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
114.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
114.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
114.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
113.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
113.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
110.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
109.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
109.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
108.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
108.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
107.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
107.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
107.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
107.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
106.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
106.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
105.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
105.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
105.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
105.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
104.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
104.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
104.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
104.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
104.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
104.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
104.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
103.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
103.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
103.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
103.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
103.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
102.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
102.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
102.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
102.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
101.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
101.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
100.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
99.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
98.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
97.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
96.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
95.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
93.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
93.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
93.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
92.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
92.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
92.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
91.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
89.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
89.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
89.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
89.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
87.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
86.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
85.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
85.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
81.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
81.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
80.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
79.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
79.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
79.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
78.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
76.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
75.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
74.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
74.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
73.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
73.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
71.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
71.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
71.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
70.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
70.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
70.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
69.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
69.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
68.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
68.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
67.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
67.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
67.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
66.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
66.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
63.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
63.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
63.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
57.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
56.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
53.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
51.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
51.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
47.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
45.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
40.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC9A3R2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
76.0
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
387.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
313.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
309.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
280.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
255.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
227.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
215.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
197.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
184.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
181.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
175.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
173.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
172.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
168.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
165.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
154.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
154.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
152.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
150.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
149.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
146.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
136.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
134.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
134.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
134.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
132.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
128.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
127.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
127.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
124.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
123.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
123.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
120.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
119.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
119.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
118.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
117.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
116.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
116.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
115.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
114.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
114.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
113.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
113.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
113.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
111.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
110.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
108.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
107.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
105.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
104.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
104.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
102.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
102.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
102.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
102.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
99.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
98.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
98.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
97.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
95.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
94.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
94.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
93.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
93.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
93.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
92.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
91.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
90.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
90.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
89.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
89.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
88.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
87.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
87.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
85.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
85.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
85.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
84.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
83.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
83.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
82.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
81.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
80.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
79.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
78.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
78.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
78.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
78.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
77.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
77.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
77.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
76.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
76.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
74.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
74.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
73.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
72.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
72.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
71.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
71.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
69.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
69.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
69.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
68.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
68.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
68.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
68.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
67.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
67.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
67.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
66.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
66.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
66.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
63.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
63.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
62.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
61.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
60.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
60.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
60.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
60.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
59.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
59.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
58.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
57.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
56.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
55.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
54.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
54.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
52.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
52.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
52.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
50.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
50.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
49.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
48.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
47.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
47.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
46.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
43.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
33.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.0
481
Tumor
0.9
915
Tumor
0.9
546
Normal
0.8
648
Normal
0.8
554
Normal
0.8
964
Normal
0.8
938
Normal
0.8
1041
Tumor
0.8
484
Normal
0.7
958
Normal
0.7
864
Normal
0.7
742
Normal
0.7
824
Normal
0.7
1032
Normal
0.7
448
Normal
0.7
327
Tumor
0.7
356
Normal
0.7
534
Normal
0.7
714
Normal
0.7
494
Normal
0.7
1014
Normal
0.7
465
Tumor
0.7
488
Normal
0.7
968
Normal
0.7
698
Normal
0.7
572
Normal
0.7
912
Normal
0.7
785
Tumor
0.7
462
Normal
0.6
911
Tumor
0.6
497
Tumor
0.6
981
Tumor
0.6
513
Tumor
0.6
132
Normal
0.6
867
Tumor
0.6
482
Normal
0.6
746
Normal
0.6
816
Normal
0.6
528
Normal
0.6
1046
Normal
0.6
415
Tumor
0.6
924
Normal
0.6
723
Tumor
0.6
868
Normal
0.6
451
Tumor
0.6
954
Normal
0.6
926
Normal
0.6
222
Normal
0.6
786
Normal
0.6
616
Normal
0.6
862
Normal
0.6
376
Normal
0.6
922
Normal
0.6
341
Tumor
0.6
136
Normal
0.6
882
Normal
0.6
662
Normal
0.6
944
Normal
0.6
636
Normal
0.6
858
Normal
0.6
756
Normal
0.6
952
Normal
0.6
1022
Normal
0.6
716
Normal
0.6
162
Normal
0.5
474
Normal
0.5
466
Normal
0.5
412
Normal
0.5
918
Normal
0.5
976
Normal
0.5
728
Normal
0.5
342
Normal
0.5
232
Normal
0.5
966
Normal
0.5
866
Normal
0.5
955
Tumor
0.5
472
Normal
0.5
1026
Normal
0.5
664
Normal
0.5
696
Normal
0.5
878
Normal
0.5
112
Tumor
0.5
128
Normal
0.5
738
Normal
0.5
514
Normal
0.5
741
Tumor
0.5
1016
Normal
0.5
196
Normal
0.5
672
Normal
0.5
666
Normal
0.5
874
Normal
0.5
977
Tumor
0.5
426
Normal
0.5
148
Normal
0.5
884
Normal
0.5
982
Normal
0.5
628
Normal
0.5
818
Normal
0.5
298
Normal
0.5
518
Normal
0.5
538
Normal
0.5
186
Normal
0.5
452
Normal
0.5
642
Normal
0.5
568
Normal
0.5
358
Normal
0.5
744
Normal
0.5
778
Normal
0.5
1044
Normal
0.5
228
Normal
0.5
686
Normal
0.5
618
Normal
0.5
852
Normal
0.4
464
Normal
0.4
916
Normal
0.4
978
Normal
0.4
861
Tumor
0.4
364
Normal
0.4
212
Normal
0.4
956
Normal
0.4
635
Tumor
0.4
394
Normal
0.4
473
Tumor
0.4
722
Normal
0.4
354
Normal
0.4
286
Normal
0.4
388
Normal
0.4
516
Normal
0.4
984
Normal
0.4
261
Tumor
0.4
627
Tumor
0.4
142
Normal
0.4
526
Normal
0.4
436
Normal
0.4
258
Normal
0.4
127
Tumor
0.4
138
Normal
0.4
314
Normal
0.4
362
Normal
0.4
1042
Normal
0.4
414
Normal
0.4
456
Normal
0.4
424
Normal
0.4
278
Normal
0.4
352
Normal
0.4
558
Normal
0.4
328
Normal
0.4
366
Normal
0.4
468
Normal
0.4
284
Normal
0.4
111
Normal
0.4
344
Normal
0.3
564
Normal
0.3
617
Tumor
0.3
1028
Normal
0.3
386
Normal
0.3
396
Normal
0.3
873
Tumor
0.3
392
Normal
0.3
272
Normal
0.3
146
Normal
0.3
332
Normal
0.3
937
Tumor
0.3
416
Normal
0.3
214
Normal
0.3
478
Normal
0.3
433
Tumor
0.3
498
Normal
0.3
114
Normal
0.3
428
Normal
0.3
218
Normal
0.3
913
Tumor
0.3
446
Normal
0.3
574
Normal
0.3
914
Normal
0.2
422
Normal
0.2
368
Normal
0.2
312
Normal
0.2
1013
Tumor
0.2
262
Normal
0.2
492
Normal
0.2
615
Tumor
0.2
384
Normal
0.2
172
Normal
0.2
963
Tumor
0.2
224
Normal
0.2
432
Normal
0.2
1045
Tumor
0.1
425
Tumor
0.1
524
Normal
0.1
353
Tumor
0.1
124
Normal
0.1
1015
Tumor
0.1
188
Normal
0.1
721
Tumor
0.1
515
Tumor
0.1
647
Tumor
0.1
365
Tumor
0.1
423
Tumor
0.1
268
Normal
0.1
545
Tumor
0.1
715
Tumor
0.1
126
Normal
0.1
536
Normal
0.1
195
Tumor
0.0
361
Tumor
0.0
483
Tumor
0.0
431
Tumor
0.0
665
Tumor
0.0
865
Tumor
0.0
461
Tumor
0.0
517
Tumor
0.0
923
Tumor
0.0
857
Tumor
0.0
493
Tumor
0.0
135
Tumor
0.0
145
Tumor
0.0
192
Normal
0.0
477
Tumor
0.0
737
Tumor
0.0
434
Normal
0.0
755
Tumor
-0.1
967
Tumor
-0.1
267
Tumor
-0.1
223
Tumor
-0.1
571
Tumor
-0.1
444
Normal
-0.1
393
Tumor
-0.1
823
Tumor
-0.1
563
Tumor
-0.1
527
Tumor
-0.1
137
Tumor
-0.1
487
Tumor
-0.1
113
Tumor
-0.1
297
Tumor
-0.2
447
Tumor
-0.2
943
Tumor
-0.2
553
Tumor
-0.2
917
Tumor
-0.2
557
Tumor
-0.2
925
Tumor
-0.2
573
Tumor
-0.2
141
Tumor
-0.2
191
Tumor
-0.2
421
Tumor
-0.2
863
Tumor
-0.2
185
Tumor
-0.2
814
Normal
-0.3
663
Tumor
-0.3
217
Tumor
-0.3
231
Tumor
-0.3
355
Tumor
-0.3
525
Tumor
-0.3
535
Tumor
-0.3
975
Tumor
-0.3
724
Normal
-0.3
131
Tumor
-0.3
1025
Tumor
-0.4
1043
Tumor
-0.4
227
Tumor
-0.4
921
Tumor
-0.4
813
Tumor
-0.4
1031
Tumor
-0.4
965
Tumor
-0.4
277
Tumor
-0.4
445
Tumor
-0.5
685
Tumor
-0.5
271
Tumor
-0.5
187
Tumor
-0.5
311
Tumor
-0.5
851
Tumor
-0.5
777
Tumor
-0.5
883
Tumor
-0.5
383
Tumor
-0.5
641
Tumor
-0.5
395
Tumor
-0.5
161
Tumor
-0.5
357
Tumor
-0.5
1021
Tumor
-0.5
363
Tumor
-0.6
713
Tumor
-0.6
745
Tumor
-0.6
463
Tumor
-0.6
727
Tumor
-0.6
881
Tumor
-0.6
467
Tumor
-0.6
411
Tumor
-0.6
221
Tumor
-0.6
743
Tumor
-0.6
213
Tumor
-0.6
455
Tumor
-0.6
491
Tumor
-0.6
435
Tumor
-0.6
471
Tumor
-0.6
697
Tumor
-0.7
533
Tumor
-0.7
443
Tumor
-0.7
567
Tumor
-0.7
171
Tumor
-0.7
343
Tumor
-0.7
331
Tumor
-0.7
413
Tumor
-0.8
983
Tumor
-0.8
367
Tumor
-0.8
147
Tumor
-0.8
427
Tumor
-0.8
817
Tumor
-0.8
313
Tumor
-0.8
391
Tumor
-0.8
285
Tumor
-0.8
877
Tumor
-0.8
1027
Tumor
-0.9
957
Tumor
-0.9
123
Tumor
-0.9
523
Tumor
-0.9
351
Tumor
-1.0
537
Tumor
-1.0
375
Tumor
-1.0
671
Tumor
-1.0
385
Tumor
-1.0
257
Tumor
-1.1
283
Tumor
-1.1
815
Tumor
-1.1
211
Tumor
-1.1
387
Tumor
-1.2
951
Tumor
-1.2
953
Tumor
-1.2
125
Tumor
-1.3
661
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.