We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX24 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX24 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.4
545
Tumor
0.9
553
Tumor
0.9
523
Tumor
0.8
865
Tumor
0.7
923
Tumor
0.7
918
Normal
0.7
518
Normal
0.6
982
Normal
0.6
411
Tumor
0.6
394
Normal
0.6
473
Tumor
0.6
981
Tumor
0.6
924
Normal
0.6
958
Normal
0.6
388
Normal
0.6
965
Tumor
0.6
955
Tumor
0.6
416
Normal
0.6
538
Normal
0.5
975
Tumor
0.5
386
Normal
0.5
937
Tumor
0.5
916
Normal
0.5
482
Normal
0.5
123
Tumor
0.5
268
Normal
0.5
926
Normal
0.5
227
Tumor
0.5
392
Normal
0.5
524
Normal
0.5
968
Normal
0.5
514
Normal
0.5
462
Normal
0.5
785
Tumor
0.5
912
Normal
0.4
472
Normal
0.4
432
Normal
0.4
921
Tumor
0.4
756
Normal
0.4
277
Tumor
0.4
125
Tumor
0.4
526
Normal
0.4
966
Normal
0.4
446
Normal
0.4
778
Normal
0.4
436
Normal
0.4
922
Normal
0.4
126
Normal
0.4
355
Tumor
0.4
285
Tumor
0.4
571
Tumor
0.4
525
Tumor
0.4
516
Normal
0.4
396
Normal
0.4
426
Normal
0.4
415
Tumor
0.4
361
Tumor
0.4
1032
Normal
0.4
917
Tumor
0.4
132
Normal
0.4
976
Normal
0.4
124
Normal
0.4
474
Normal
0.4
915
Tumor
0.4
186
Normal
0.3
271
Tumor
0.3
546
Normal
0.3
964
Normal
0.3
513
Tumor
0.3
128
Normal
0.3
967
Tumor
0.3
554
Normal
0.3
162
Normal
0.3
147
Tumor
0.3
391
Tumor
0.3
742
Normal
0.3
428
Normal
0.3
172
Normal
0.3
131
Tumor
0.3
424
Normal
0.3
925
Tumor
0.3
447
Tumor
0.3
488
Normal
0.3
527
Tumor
0.3
412
Normal
0.3
434
Normal
0.3
471
Tumor
0.3
484
Normal
0.3
954
Normal
0.3
494
Normal
0.3
328
Normal
0.3
528
Normal
0.3
978
Normal
0.3
1016
Normal
0.3
228
Normal
0.3
358
Normal
0.3
368
Normal
0.3
258
Normal
0.3
956
Normal
0.2
515
Tumor
0.2
743
Tumor
0.2
1046
Normal
0.2
136
Normal
0.2
145
Tumor
0.2
478
Normal
0.2
383
Tumor
0.2
952
Normal
0.2
356
Normal
0.2
188
Normal
0.2
272
Normal
0.2
352
Normal
0.2
435
Tumor
0.2
414
Normal
0.2
984
Normal
0.2
298
Normal
0.2
114
Normal
0.2
312
Normal
0.2
284
Normal
0.2
864
Normal
0.2
278
Normal
0.2
283
Tumor
0.2
262
Normal
0.2
492
Normal
0.2
738
Normal
0.2
223
Tumor
0.2
617
Tumor
0.2
444
Normal
0.2
138
Normal
0.2
286
Normal
0.2
567
Tumor
0.2
722
Normal
0.2
884
Normal
0.2
395
Tumor
0.2
422
Normal
0.2
362
Normal
0.2
353
Tumor
0.2
944
Normal
0.2
786
Normal
0.2
451
Tumor
0.2
777
Tumor
0.2
224
Normal
0.2
498
Normal
0.2
466
Normal
0.2
728
Normal
0.2
938
Normal
0.2
882
Normal
0.2
327
Tumor
0.2
755
Tumor
0.2
574
Normal
0.1
111
Normal
0.1
741
Tumor
0.1
364
Normal
0.1
331
Tumor
0.1
878
Normal
0.1
1044
Normal
0.1
148
Normal
0.1
342
Normal
0.1
824
Normal
0.1
746
Normal
0.1
468
Normal
0.1
568
Normal
0.1
564
Normal
0.1
431
Tumor
0.1
387
Tumor
0.1
852
Normal
0.1
464
Normal
0.1
212
Normal
0.1
332
Normal
0.1
313
Tumor
0.1
535
Tumor
0.1
862
Normal
0.1
536
Normal
0.1
723
Tumor
0.1
257
Tumor
0.1
344
Normal
0.1
146
Normal
0.1
724
Normal
0.1
376
Normal
0.1
497
Tumor
0.1
1026
Normal
0.1
914
Normal
0.1
491
Tumor
0.1
384
Normal
0.1
1028
Normal
0.1
744
Normal
0.1
467
Tumor
0.1
1042
Normal
0.1
354
Normal
0.1
214
Normal
0.1
477
Tumor
0.1
433
Tumor
0.1
314
Normal
0.1
367
Tumor
0.1
737
Tumor
0.1
218
Normal
0.1
366
Normal
0.1
357
Tumor
0.1
814
Normal
0.0
211
Tumor
0.0
858
Normal
0.0
487
Tumor
0.0
1043
Tumor
0.0
745
Tumor
0.0
813
Tumor
0.0
217
Tumor
0.0
456
Normal
0.0
963
Tumor
0.0
452
Normal
0.0
196
Normal
0.0
861
Tumor
0.0
851
Tumor
0.0
351
Tumor
0.0
874
Normal
0.0
423
Tumor
0.0
465
Tumor
0.0
222
Normal
0.0
113
Tumor
0.0
1014
Normal
0.0
261
Tumor
0.0
413
Tumor
0.0
881
Tumor
0.0
192
Normal
0.0
534
Normal
0.0
616
Normal
0.0
171
Tumor
0.0
448
Normal
0.0
697
Tumor
0.0
816
Normal
0.0
142
Normal
0.0
868
Normal
-0.1
823
Tumor
-0.1
558
Normal
-0.1
698
Normal
-0.1
1022
Normal
-0.1
232
Normal
-0.1
557
Tumor
-0.1
187
Tumor
-0.1
461
Tumor
-0.1
127
Tumor
-0.1
517
Tumor
-0.1
911
Tumor
-0.1
185
Tumor
-0.1
1013
Tumor
-0.1
341
Tumor
-0.1
427
Tumor
-0.1
1031
Tumor
-0.1
463
Tumor
-0.1
714
Normal
-0.1
483
Tumor
-0.1
137
Tumor
-0.1
635
Tumor
-0.1
873
Tumor
-0.1
618
Normal
-0.1
866
Normal
-0.1
1025
Tumor
-0.1
951
Tumor
-0.1
817
Tumor
-0.1
213
Tumor
-0.1
572
Normal
-0.2
628
Normal
-0.2
365
Tumor
-0.2
363
Tumor
-0.2
385
Tumor
-0.2
135
Tumor
-0.2
695
Tumor
-0.2
913
Tumor
-0.2
867
Tumor
-0.2
533
Tumor
-0.2
863
Tumor
-0.2
393
Tumor
-0.2
311
Tumor
-0.2
1041
Tumor
-0.2
818
Normal
-0.2
191
Tumor
-0.2
1045
Tumor
-0.2
343
Tumor
-0.2
943
Tumor
-0.2
481
Tumor
-0.2
267
Tumor
-0.2
455
Tumor
-0.2
161
Tumor
-0.2
445
Tumor
-0.3
696
Normal
-0.3
141
Tumor
-0.3
636
Normal
-0.3
297
Tumor
-0.3
493
Tumor
-0.3
686
Normal
-0.3
713
Tumor
-0.3
983
Tumor
-0.3
857
Tumor
-0.3
443
Tumor
-0.3
642
Normal
-0.3
883
Tumor
-0.3
721
Tumor
-0.3
815
Tumor
-0.3
537
Tumor
-0.3
375
Tumor
-0.4
221
Tumor
-0.4
231
Tumor
-0.4
716
Normal
-0.4
573
Tumor
-0.4
112
Tumor
-0.4
627
Tumor
-0.4
977
Tumor
-0.4
1015
Tumor
-0.4
421
Tumor
-0.4
425
Tumor
-0.5
1027
Tumor
-0.5
727
Tumor
-0.6
953
Tumor
-0.6
715
Tumor
-0.6
685
Tumor
-0.6
563
Tumor
-0.7
195
Tumor
-0.7
615
Tumor
-0.9
877
Tumor
-0.9
641
Tumor
-1.0
1021
Tumor
-1.3
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
