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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNPO3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNPO3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
231
Samples
Sample
Description
TPM
DO50798
0 years, male, NA, stage:3, dead, 30 days
30.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
0.8
497
Tumor
0.8
125
Tumor
0.7
375
Tumor
0.6
123
Tumor
0.6
171
Tumor
0.6
965
Tumor
0.6
537
Tumor
0.6
635
Tumor
0.5
1013
Tumor
0.5
911
Tumor
0.5
483
Tumor
0.5
435
Tumor
0.5
777
Tumor
0.5
257
Tumor
0.5
425
Tumor
0.5
313
Tumor
0.5
411
Tumor
0.4
661
Tumor
0.4
343
Tumor
0.4
615
Tumor
0.4
977
Tumor
0.4
147
Tumor
0.4
785
Tumor
0.4
387
Tumor
0.4
351
Tumor
0.4
851
Tumor
0.4
527
Tumor
0.4
647
Tumor
0.3
915
Tumor
0.3
357
Tumor
0.3
353
Tumor
0.3
283
Tumor
0.3
1027
Tumor
0.3
455
Tumor
0.3
953
Tumor
0.3
815
Tumor
0.3
567
Tumor
0.3
743
Tumor
0.3
135
Tumor
0.3
963
Tumor
0.3
431
Tumor
0.3
1021
Tumor
0.3
213
Tumor
0.2
755
Tumor
0.2
223
Tumor
0.2
724
Normal
0.2
341
Tumor
0.2
267
Tumor
0.2
231
Tumor
0.2
327
Tumor
0.2
983
Tumor
0.2
865
Tumor
0.2
487
Tumor
0.2
127
Tumor
0.2
342
Normal
0.2
491
Tumor
0.2
925
Tumor
0.2
533
Tumor
0.2
493
Tumor
0.2
395
Tumor
0.2
867
Tumor
0.2
741
Tumor
0.2
261
Tumor
0.2
813
Tumor
0.2
695
Tumor
0.2
571
Tumor
0.1
481
Tumor
0.1
697
Tumor
0.1
137
Tumor
0.1
663
Tumor
0.1
523
Tumor
0.1
391
Tumor
0.1
128
Normal
0.1
141
Tumor
0.1
951
Tumor
0.1
535
Tumor
0.1
883
Tumor
0.1
943
Tumor
0.1
285
Tumor
0.1
554
Normal
0.1
1041
Tumor
0.1
573
Tumor
0.1
443
Tumor
0.1
187
Tumor
0.1
222
Normal
0.1
636
Normal
0.1
344
Normal
0.1
642
Normal
0.1
227
Tumor
0.1
648
Normal
0.1
618
Normal
0.1
271
Tumor
0.1
185
Tumor
0.1
114
Normal
0.0
427
Tumor
0.0
385
Tumor
0.0
376
Normal
0.0
421
Tumor
0.0
311
Tumor
0.0
465
Tumor
0.0
413
Tumor
0.0
433
Tumor
0.0
277
Tumor
0.0
484
Normal
0.0
221
Tumor
0.0
957
Tumor
0.0
217
Tumor
0.0
195
Tumor
0.0
477
Tumor
0.0
131
Tumor
0.0
124
Normal
0.0
616
Normal
0.0
877
Tumor
0.0
363
Tumor
0.0
671
Tumor
0.0
745
Tumor
0.0
161
Tumor
0.0
515
Tumor
0.0
358
Normal
0.0
628
Normal
0.0
627
Tumor
0.0
196
Normal
0.0
436
Normal
0.0
861
Tumor
0.0
365
Tumor
0.0
525
Tumor
0.0
664
Normal
0.0
354
Normal
0.0
873
Tumor
0.0
545
Tumor
0.0
361
Tumor
0.0
937
Tumor
0.0
744
Normal
0.0
111
Normal
0.0
191
Tumor
-0.1
297
Tumor
-0.1
517
Tumor
-0.1
727
Tumor
-0.1
352
Normal
-0.1
862
Normal
-0.1
1043
Tumor
-0.1
367
Tumor
-0.1
923
Tumor
-0.1
448
Normal
-0.1
473
Tumor
-0.1
298
Normal
-0.1
214
Normal
-0.1
685
Tumor
-0.1
392
Normal
-0.1
1015
Tumor
-0.1
434
Normal
-0.1
955
Tumor
-0.1
218
Normal
-0.1
742
Normal
-0.1
388
Normal
-0.1
461
Tumor
-0.1
975
Tumor
-0.1
368
Normal
-0.1
662
Normal
-0.1
148
Normal
-0.1
1045
Tumor
-0.1
518
Normal
-0.1
355
Tumor
-0.1
332
Normal
-0.1
423
Tumor
-0.1
737
Tumor
-0.1
393
Tumor
-0.1
272
Normal
-0.1
396
Normal
-0.1
738
Normal
-0.1
172
Normal
-0.1
878
Normal
-0.1
394
Normal
-0.1
211
Tumor
-0.1
881
Tumor
-0.1
466
Normal
-0.1
314
Normal
-0.1
1014
Normal
-0.1
698
Normal
-0.1
557
Tumor
-0.1
232
Normal
-0.1
462
Normal
-0.1
641
Tumor
-0.1
553
Tumor
-0.1
746
Normal
-0.1
756
Normal
-0.1
1046
Normal
-0.1
966
Normal
-0.1
142
Normal
-0.1
426
Normal
-0.1
446
Normal
-0.1
666
Normal
-0.1
356
Normal
-0.1
723
Tumor
-0.1
917
Tumor
-0.1
952
Normal
-0.1
132
Normal
-0.1
432
Normal
-0.1
186
Normal
-0.2
452
Normal
-0.2
858
Normal
-0.2
665
Tumor
-0.2
546
Normal
-0.2
778
Normal
-0.2
278
Normal
-0.2
412
Normal
-0.2
721
Tumor
-0.2
1016
Normal
-0.2
572
Normal
-0.2
857
Tumor
-0.2
816
Normal
-0.2
383
Tumor
-0.2
882
Normal
-0.2
386
Normal
-0.2
228
Normal
-0.2
162
Normal
-0.2
258
Normal
-0.2
672
Normal
-0.2
384
Normal
-0.2
126
Normal
-0.2
467
Tumor
-0.2
414
Normal
-0.2
714
Normal
-0.2
113
Tumor
-0.2
913
Tumor
-0.2
456
Normal
-0.2
924
Normal
-0.2
938
Normal
-0.2
526
Normal
-0.2
362
Normal
-0.2
112
Tumor
-0.2
262
Normal
-0.2
513
Tumor
-0.2
447
Tumor
-0.2
568
Normal
-0.2
366
Normal
-0.2
516
Normal
-0.2
146
Normal
-0.2
818
Normal
-0.2
1026
Normal
-0.2
192
Normal
-0.2
286
Normal
-0.2
422
Normal
-0.2
728
Normal
-0.2
482
Normal
-0.2
328
Normal
-0.2
428
Normal
-0.2
982
Normal
-0.2
1044
Normal
-0.2
984
Normal
-0.2
981
Tumor
-0.2
968
Normal
-0.2
444
Normal
-0.3
786
Normal
-0.3
722
Normal
-0.3
524
Normal
-0.3
713
Tumor
-0.3
188
Normal
-0.3
696
Normal
-0.3
864
Normal
-0.3
463
Tumor
-0.3
224
Normal
-0.3
492
Normal
-0.3
964
Normal
-0.3
534
Normal
-0.3
498
Normal
-0.3
538
Normal
-0.3
472
Normal
-0.3
944
Normal
-0.3
715
Tumor
-0.3
558
Normal
-0.3
617
Tumor
-0.3
138
Normal
-0.3
268
Normal
-0.3
686
Normal
-0.3
364
Normal
-0.3
1028
Normal
-0.3
468
Normal
-0.3
464
Normal
-0.3
145
Tumor
-0.3
914
Normal
-0.3
416
Normal
-0.3
514
Normal
-0.3
536
Normal
-0.3
488
Normal
-0.3
564
Normal
-0.3
284
Normal
-0.3
716
Normal
-0.3
978
Normal
-0.3
921
Tumor
-0.3
823
Tumor
-0.3
474
Normal
-0.3
574
Normal
-0.3
1032
Normal
-0.3
922
Normal
-0.3
1025
Tumor
-0.3
958
Normal
-0.3
967
Tumor
-0.3
212
Normal
-0.3
136
Normal
-0.3
494
Normal
-0.3
424
Normal
-0.3
563
Tumor
-0.3
471
Tumor
-0.3
824
Normal
-0.3
926
Normal
-0.3
1022
Normal
-0.3
866
Normal
-0.3
863
Tumor
-0.3
956
Normal
-0.4
954
Normal
-0.4
874
Normal
-0.4
528
Normal
-0.4
312
Normal
-0.4
912
Normal
-0.4
478
Normal
-0.4
1031
Tumor
-0.4
814
Normal
-0.4
451
Tumor
-0.4
976
Normal
-0.4
884
Normal
-0.4
415
Tumor
-0.4
868
Normal
-0.4
916
Normal
-0.4
852
Normal
-0.4
1042
Normal
-0.4
817
Tumor
-0.5
918
Normal
-0.5
331
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
