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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NGFR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NGFR is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.3
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
492
Normal
1.6
455
Tumor
1.6
444
Normal
1.4
483
Tumor
1.4
554
Normal
1.2
124
Normal
1.2
538
Normal
1.2
881
Tumor
1.1
297
Tumor
1.1
366
Normal
1.1
126
Normal
1.0
975
Tumor
1.0
874
Normal
1.0
211
Tumor
1.0
114
Normal
1.0
434
Normal
1.0
362
Normal
0.9
952
Normal
0.9
563
Tumor
0.9
421
Tumor
0.9
192
Normal
0.9
268
Normal
0.9
383
Tumor
0.8
461
Tumor
0.8
728
Normal
0.8
386
Normal
0.8
146
Normal
0.8
368
Normal
0.8
493
Tumor
0.8
471
Tumor
0.8
545
Tumor
0.7
185
Tumor
0.7
188
Normal
0.7
376
Normal
0.6
312
Normal
0.6
145
Tumor
0.6
738
Normal
0.6
272
Normal
0.6
823
Tumor
0.6
138
Normal
0.6
817
Tumor
0.6
478
Normal
0.5
344
Normal
0.5
232
Normal
0.5
1025
Tumor
0.5
982
Normal
0.5
311
Tumor
0.5
446
Normal
0.5
262
Normal
0.5
963
Tumor
0.5
111
Normal
0.5
384
Normal
0.5
396
Normal
0.5
258
Normal
0.5
878
Normal
0.5
422
Normal
0.4
672
Normal
0.4
214
Normal
0.4
666
Normal
0.4
491
Tumor
0.4
662
Normal
0.4
365
Tumor
0.4
141
Tumor
0.4
921
Tumor
0.3
916
Normal
0.3
536
Normal
0.3
574
Normal
0.3
983
Tumor
0.3
136
Normal
0.3
392
Normal
0.3
742
Normal
0.3
433
Tumor
0.3
746
Normal
0.3
342
Normal
0.3
137
Tumor
0.3
128
Normal
0.2
172
Normal
0.2
1014
Normal
0.2
277
Tumor
0.2
648
Normal
0.2
218
Normal
0.2
452
Normal
0.2
132
Normal
0.2
914
Normal
0.2
278
Normal
0.2
564
Normal
0.2
212
Normal
0.2
474
Normal
0.2
816
Normal
0.2
785
Tumor
0.1
223
Tumor
0.1
436
Normal
0.1
456
Normal
0.1
924
Normal
0.1
394
Normal
0.1
1028
Normal
0.1
1026
Normal
0.1
553
Tumor
0.1
984
Normal
0.1
355
Tumor
0.1
664
Normal
0.1
186
Normal
0.1
966
Normal
0.1
213
Tumor
0.1
671
Tumor
0.1
298
Normal
0.1
737
Tumor
0.1
918
Normal
0.0
271
Tumor
0.0
148
Normal
0.0
572
Normal
0.0
917
Tumor
0.0
925
Tumor
0.0
1042
Normal
0.0
724
Normal
0.0
162
Normal
0.0
267
Tumor
0.0
361
Tumor
0.0
558
Normal
0.0
187
Tumor
-0.1
943
Tumor
-0.1
857
Tumor
-0.1
1031
Tumor
-0.1
352
Normal
-0.1
472
Normal
-0.1
412
Normal
-0.1
358
Normal
-0.1
231
Tumor
-0.1
956
Normal
-0.1
473
Tumor
-0.1
546
Normal
-0.1
641
Tumor
-0.1
462
Normal
-0.1
432
Normal
-0.1
515
Tumor
-0.1
426
Normal
-0.2
135
Tumor
-0.2
466
Normal
-0.2
415
Tumor
-0.2
464
Normal
-0.2
388
Normal
-0.2
331
Tumor
-0.2
727
Tumor
-0.2
1016
Normal
-0.2
375
Tumor
-0.2
1015
Tumor
-0.2
497
Tumor
-0.2
161
Tumor
-0.2
354
Normal
-0.3
978
Normal
-0.3
568
Normal
-0.3
665
Tumor
-0.3
976
Normal
-0.3
196
Normal
-0.3
922
Normal
-0.3
525
Tumor
-0.3
113
Tumor
-0.3
477
Tumor
-0.3
468
Normal
-0.3
1032
Normal
-0.3
923
Tumor
-0.3
228
Normal
-0.3
481
Tumor
-0.3
1027
Tumor
-0.3
884
Normal
-0.3
424
Normal
-0.3
413
Tumor
-0.3
222
Normal
-0.3
864
Normal
-0.3
428
Normal
-0.4
697
Tumor
-0.4
534
Normal
-0.4
332
Normal
-0.4
463
Tumor
-0.4
367
Tumor
-0.4
147
Tumor
-0.4
618
Normal
-0.4
363
Tumor
-0.4
257
Tumor
-0.4
778
Normal
-0.4
261
Tumor
-0.4
414
Normal
-0.4
926
Normal
-0.4
516
Normal
-0.4
171
Tumor
-0.4
883
Tumor
-0.5
498
Normal
-0.5
642
Normal
-0.5
647
Tumor
-0.5
482
Normal
-0.5
913
Tumor
-0.5
866
Normal
-0.5
814
Normal
-0.5
882
Normal
-0.5
744
Normal
-0.5
868
Normal
-0.5
661
Tumor
-0.5
518
Normal
-0.5
284
Normal
-0.5
858
Normal
-0.5
636
Normal
-0.5
955
Tumor
-0.5
395
Tumor
-0.5
224
Normal
-0.5
142
Normal
-0.5
467
Tumor
-0.6
968
Normal
-0.6
663
Tumor
-0.6
813
Tumor
-0.6
977
Tumor
-0.6
537
Tumor
-0.6
628
Normal
-0.6
112
Tumor
-0.6
1041
Tumor
-0.6
286
Normal
-0.6
427
Tumor
-0.6
283
Tumor
-0.6
217
Tumor
-0.6
416
Normal
-0.7
425
Tumor
-0.7
981
Tumor
-0.7
328
Normal
-0.7
824
Normal
-0.7
387
Tumor
-0.7
862
Normal
-0.7
867
Tumor
-0.7
364
Normal
-0.7
912
Normal
-0.7
535
Tumor
-0.7
527
Tumor
-0.7
221
Tumor
-0.7
127
Tumor
-0.8
314
Normal
-0.8
852
Normal
-0.8
423
Tumor
-0.8
488
Normal
-0.8
573
Tumor
-0.8
1022
Normal
-0.8
526
Normal
-0.8
1021
Tumor
-0.8
494
Normal
-0.8
356
Normal
-0.8
191
Tumor
-0.8
616
Normal
-0.8
125
Tumor
-0.9
123
Tumor
-0.9
447
Tumor
-0.9
341
Tumor
-0.9
484
Normal
-0.9
528
Normal
-0.9
443
Tumor
-0.9
411
Tumor
-0.9
938
Normal
-0.9
723
Tumor
-0.9
698
Normal
-0.9
227
Tumor
-0.9
964
Normal
-0.9
1044
Normal
-0.9
343
Tumor
-0.9
385
Tumor
-1.0
353
Tumor
-1.0
195
Tumor
-1.0
285
Tumor
-1.0
958
Normal
-1.0
523
Tumor
-1.1
627
Tumor
-1.1
514
Normal
-1.1
1046
Normal
-1.1
431
Tumor
-1.1
448
Normal
-1.1
393
Tumor
-1.1
861
Tumor
-1.1
327
Tumor
-1.1
1013
Tumor
-1.1
313
Tumor
-1.1
877
Tumor
-1.2
953
Tumor
-1.2
944
Normal
-1.2
524
Normal
-1.2
517
Tumor
-1.3
465
Tumor
-1.3
567
Tumor
-1.3
965
Tumor
-1.3
451
Tumor
-1.3
741
Tumor
-1.3
915
Tumor
-1.3
863
Tumor
-1.4
1045
Tumor
-1.4
435
Tumor
-1.4
951
Tumor
-1.5
617
Tumor
-1.5
445
Tumor
-1.5
533
Tumor
-1.5
818
Normal
-1.5
954
Normal
-1.5
957
Tumor
-1.5
487
Tumor
-1.5
873
Tumor
-1.6
131
Tumor
-1.6
615
Tumor
-1.6
937
Tumor
-1.6
391
Tumor
-1.6
513
Tumor
-1.6
911
Tumor
-1.7
357
Tumor
-1.7
351
Tumor
-1.7
777
Tumor
-1.8
786
Normal
-1.8
1043
Tumor
-1.8
743
Tumor
-1.8
571
Tumor
-1.8
756
Normal
-1.8
557
Tumor
-1.9
967
Tumor
-1.9
745
Tumor
-2.0
755
Tumor
-2.1
635
Tumor
-2.1
865
Tumor
-2.1
815
Tumor
-2.2
851
Tumor
-2.5
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
