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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST3GAL6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST3GAL6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
60.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
47.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
42.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
41.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
35.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.4
964
Normal
1.0
285
Tumor
0.9
912
Normal
0.9
636
Normal
0.9
484
Normal
0.9
922
Normal
0.9
554
Normal
0.9
926
Normal
0.8
527
Tumor
0.8
222
Normal
0.8
488
Normal
0.8
261
Tumor
0.8
568
Normal
0.8
865
Tumor
0.8
572
Normal
0.8
196
Normal
0.8
534
Normal
0.7
878
Normal
0.7
396
Normal
0.7
342
Normal
0.7
862
Normal
0.7
526
Normal
0.7
778
Normal
0.7
918
Normal
0.7
368
Normal
0.7
218
Normal
0.7
618
Normal
0.7
864
Normal
0.7
866
Normal
0.7
1014
Normal
0.7
358
Normal
0.6
128
Normal
0.6
913
Tumor
0.6
984
Normal
0.6
756
Normal
0.6
394
Normal
0.6
558
Normal
0.6
914
Normal
0.6
824
Normal
0.6
412
Normal
0.6
111
Normal
0.6
388
Normal
0.6
958
Normal
0.6
744
Normal
0.6
232
Normal
0.6
426
Normal
0.6
392
Normal
0.6
1032
Normal
0.6
298
Normal
0.6
698
Normal
0.6
786
Normal
0.6
376
Normal
0.6
286
Normal
0.6
911
Tumor
0.6
1042
Normal
0.6
574
Normal
0.6
352
Normal
0.6
452
Normal
0.6
642
Normal
0.5
882
Normal
0.5
944
Normal
0.5
212
Normal
0.5
148
Normal
0.5
1016
Normal
0.5
742
Normal
0.5
1026
Normal
0.5
528
Normal
0.5
867
Tumor
0.5
456
Normal
0.5
494
Normal
0.5
328
Normal
0.5
354
Normal
0.5
968
Normal
0.5
696
Normal
0.5
884
Normal
0.5
564
Normal
0.5
514
Normal
0.5
473
Tumor
0.5
938
Normal
0.5
448
Normal
0.5
1046
Normal
0.5
422
Normal
0.5
728
Normal
0.5
1028
Normal
0.5
124
Normal
0.5
524
Normal
0.5
1022
Normal
0.5
976
Normal
0.5
314
Normal
0.5
228
Normal
0.5
482
Normal
0.4
272
Normal
0.4
746
Normal
0.4
332
Normal
0.4
858
Normal
0.4
356
Normal
0.4
186
Normal
0.4
518
Normal
0.4
723
Tumor
0.4
868
Normal
0.4
231
Tumor
0.4
954
Normal
0.4
487
Tumor
0.4
628
Normal
0.4
966
Normal
0.4
258
Normal
0.4
114
Normal
0.4
978
Normal
0.4
955
Tumor
0.4
474
Normal
0.4
915
Tumor
0.4
436
Normal
0.4
741
Tumor
0.4
428
Normal
0.4
414
Normal
0.4
362
Normal
0.4
672
Normal
0.4
714
Normal
0.4
982
Normal
0.3
132
Normal
0.3
491
Tumor
0.3
952
Normal
0.3
278
Normal
0.3
481
Tumor
0.3
617
Tumor
0.3
616
Normal
0.3
464
Normal
0.3
386
Normal
0.3
745
Tumor
0.3
924
Normal
0.3
738
Normal
0.3
384
Normal
0.3
981
Tumor
0.3
516
Normal
0.3
874
Normal
0.3
446
Normal
0.3
284
Normal
0.3
462
Normal
0.3
432
Normal
0.3
468
Normal
0.3
162
Normal
0.3
916
Normal
0.3
466
Normal
0.3
366
Normal
0.3
445
Tumor
0.3
327
Tumor
0.2
267
Tumor
0.2
214
Normal
0.2
136
Normal
0.2
364
Normal
0.2
142
Normal
0.2
722
Normal
0.2
956
Normal
0.2
172
Normal
0.2
523
Tumor
0.2
686
Normal
0.2
262
Normal
0.2
424
Normal
0.2
818
Normal
0.2
146
Normal
0.2
472
Normal
0.2
416
Normal
0.2
465
Tumor
0.2
138
Normal
0.1
344
Normal
0.1
536
Normal
0.1
816
Normal
0.1
1044
Normal
0.1
126
Normal
0.1
195
Tumor
0.1
716
Normal
0.1
1027
Tumor
0.1
331
Tumor
0.1
268
Normal
0.1
873
Tumor
0.1
492
Normal
0.1
312
Normal
0.1
125
Tumor
0.1
217
Tumor
0.1
353
Tumor
0.1
648
Normal
0.0
191
Tumor
0.0
662
Normal
0.0
546
Normal
0.0
451
Tumor
0.0
498
Normal
0.0
557
Tumor
0.0
664
Normal
0.0
361
Tumor
0.0
635
Tumor
0.0
538
Normal
0.0
852
Normal
-0.1
415
Tumor
-0.1
515
Tumor
-0.1
444
Normal
-0.1
192
Normal
-0.1
127
Tumor
-0.1
497
Tumor
-0.1
112
Tumor
-0.1
343
Tumor
-0.1
937
Tumor
-0.1
434
Normal
-0.1
141
Tumor
-0.1
477
Tumor
-0.1
755
Tumor
-0.1
813
Tumor
-0.1
615
Tumor
-0.1
385
Tumor
-0.1
223
Tumor
-0.1
113
Tumor
-0.2
861
Tumor
-0.2
137
Tumor
-0.2
447
Tumor
-0.2
145
Tumor
-0.2
727
Tumor
-0.2
393
Tumor
-0.2
883
Tumor
-0.2
188
Normal
-0.2
421
Tumor
-0.2
1015
Tumor
-0.2
224
Normal
-0.2
814
Normal
-0.2
171
Tumor
-0.2
715
Tumor
-0.2
387
Tumor
-0.3
695
Tumor
-0.3
983
Tumor
-0.3
478
Normal
-0.3
313
Tumor
-0.3
953
Tumor
-0.3
513
Tumor
-0.3
1043
Tumor
-0.3
737
Tumor
-0.3
963
Tumor
-0.3
517
Tumor
-0.3
341
Tumor
-0.3
367
Tumor
-0.3
423
Tumor
-0.3
1045
Tumor
-0.3
627
Tumor
-0.3
461
Tumor
-0.4
943
Tumor
-0.4
431
Tumor
-0.4
471
Tumor
-0.4
697
Tumor
-0.4
573
Tumor
-0.4
147
Tumor
-0.4
257
Tumor
-0.4
443
Tumor
-0.4
391
Tumor
-0.4
553
Tumor
-0.4
271
Tumor
-0.4
187
Tumor
-0.4
433
Tumor
-0.4
851
Tumor
-0.4
533
Tumor
-0.4
213
Tumor
-0.4
123
Tumor
-0.4
857
Tumor
-0.4
863
Tumor
-0.4
357
Tumor
-0.5
721
Tumor
-0.5
567
Tumor
-0.5
355
Tumor
-0.5
435
Tumor
-0.5
666
Normal
-0.5
375
Tumor
-0.5
1021
Tumor
-0.5
411
Tumor
-0.5
277
Tumor
-0.5
823
Tumor
-0.5
563
Tumor
-0.5
661
Tumor
-0.5
525
Tumor
-0.5
311
Tumor
-0.5
463
Tumor
-0.5
493
Tumor
-0.5
395
Tumor
-0.6
161
Tumor
-0.6
785
Tumor
-0.6
967
Tumor
-0.6
1025
Tumor
-0.6
777
Tumor
-0.6
483
Tumor
-0.6
685
Tumor
-0.6
1013
Tumor
-0.6
363
Tumor
-0.6
427
Tumor
-0.7
297
Tumor
-0.7
365
Tumor
-0.7
917
Tumor
-0.7
977
Tumor
-0.7
135
Tumor
-0.7
713
Tumor
-0.7
425
Tumor
-0.7
665
Tumor
-0.7
965
Tumor
-0.7
185
Tumor
-0.8
221
Tumor
-0.8
467
Tumor
-0.8
545
Tumor
-0.8
957
Tumor
-0.8
283
Tumor
-0.8
455
Tumor
-0.9
877
Tumor
-0.9
923
Tumor
-0.9
537
Tumor
-0.9
663
Tumor
-0.9
925
Tumor
-0.9
571
Tumor
-0.9
351
Tumor
-0.9
641
Tumor
-1.0
383
Tumor
-1.0
647
Tumor
-1.0
743
Tumor
-1.0
413
Tumor
-1.0
724
Normal
-1.1
975
Tumor
-1.1
671
Tumor
-1.2
881
Tumor
-1.2
1031
Tumor
-1.2
535
Tumor
-1.3
951
Tumor
-1.3
131
Tumor
-1.3
211
Tumor
-1.3
227
Tumor
-1.4
815
Tumor
-1.4
817
Tumor
-1.8
921
Tumor
-1.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
