MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.9 nTPM
HPA Brain:59.2 nTPM
GTEx:16.9 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:17.8 nTPM
Mouse:35.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2586 Male, age 75, left hemisphere 71.6
2019 Male, age 18, unknown 69.3
1830 Male, age 51, unknown 61.9
1827 Male, age 72, unknown 60.9
2666 Male, age 74, left hemisphere 58.4
2411 Female, age 72, unknown 56.5
2828 Female, age 72, unknown 54.8
1833 Male, age 53, unknown 54.4
1870 Female, age 42, unknown 54.2
2219 Male, age 76, both hemispheres 47.9
Dorsal raphe nucleus
nTPM: 58.9
2047 Male, age 72, unknown 69.0
2298 Female, age 72, unknown 62.2
2016 Female, age 72, unknown 56.2
2750 Male, age 76, both hemispheres 55.2
1828 Male, age 53, unknown 52.0
Inferior colliculus
nTPM: 48.5
2097 Female, age 72, unknown 54.1
1848 Female, age 42, unknown 50.9
1890 Male, age 53, unknown 46.1
2849 Male, age 72, unknown 42.7
Median raphe nucleus
nTPM: 56.0
2220 Male, age 76, midline 56.0
Periaquaductal grey, anterior
nTPM: 58.9
1947 Male, age 18, unknown 64.2
2502 Female, age 75, unknown 62.3
1795 Male, age 51, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 52.7
2464 Female, age 72, unknown 60.0
1831 Male, age 72, unknown 52.8
1840 Male, age 53, unknown 52.6
2850 Male, age 76, both hemispheres 45.3
Periaquaductal grey, lateral
nTPM: 52.8
2140 Male, age 76, both hemispheres 54.5
2053 Male, age 18, unknown 53.3
2272 Male, age 74, both hemispheres 50.5
Pretectal area
nTPM: 56.4
1815 Male, age 53, unknown 62.3
2007 Male, age 72, unknown 60.2
1817 Female, age 42, unknown 59.7
1816 Male, age 51, unknown 59.5
1944 Female, age 72, unknown 59.0
2224 Female, age 72, unknown 58.9
2407 Male, age 75, both hemispheres 58.9
2273 Male, age 74, both hemispheres 53.5
2316 Male, age 76, right hemisphere 49.9
2825 Male, age 18, unknown 49.6
2667 Female, age 75, unknown 49.2
Red nucleus
nTPM: 51.0
2584 Male, age 75, left hemisphere 57.8
1904 Male, age 53, unknown 56.8
2588 Male, age 74, left hemisphere 56.7
1865 Male, age 51, unknown 54.0
1954 Female, age 42, unknown 52.1
1821 Female, age 72, unknown 51.5
2503 Female, age 72, unknown 50.3
2823 Male, age 76, right hemisphere 49.1
2785 Male, age 18, unknown 47.7
2725 Female, age 75, unknown 45.8
2769 Male, age 72, unknown 45.5
2227 Male, age 72, unknown 44.4
Substantia nigra
nTPM: 55.2
2590 Female, age 75, unknown 60.8
2583 Male, age 75, right hemisphere 59.0
2241 Male, age 72, unknown 58.8
2665 Male, age 74, both hemispheres 58.5
1851 Male, age 51, unknown 57.5
1889 Female, age 72, unknown 54.8
1941 Male, age 53, unknown 53.4
1916 Female, age 42, unknown 52.6
2699 Male, age 18, unknown 48.6
2409 Female, age 72, unknown 48.5
Superior colliculus
nTPM: 59.2
2664 Male, age 75, both hemispheres 69.1
2668 Female, age 75, unknown 63.4
1913 Female, age 42, unknown 62.2
1796 Male, age 53, unknown 61.4
2261 Male, age 18, unknown 61.3
1995 Male, age 72, unknown 60.5
2087 Female, age 72, unknown 57.8
1839 Male, age 51, unknown 54.6
2587 Male, age 74, left hemisphere 54.2
1895 Male, age 76, right hemisphere 47.0
Ventral tegmental area
nTPM: 54.7
2410 Female, age 72, unknown 60.6
1942 Male, age 51, unknown 55.6
2021 Male, age 53, unknown 55.2
2223 Female, age 72, unknown 54.2
1915 Female, age 42, unknown 52.4
2218 Male, age 76, both hemispheres 50.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.9
Samples: 139

Max nTPM: 32.1
Min nTPM: 8.2
Std nTPM: 4.1
Median nTPM: 16.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 32.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 29.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 27.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 25.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 24.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 23.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 22.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 17.9
Min nTPM: 14.6
Sample A Female 16.7
Sample B Female 17.9
Sample C Male 16.5
Sample D Male 14.6
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 16.2
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 15.9
Sample C Male 14.4
Sample D Male 16.2
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 15.3
Min nTPM: 14.9
Sample B Female 15.3
Sample C Male 15.2
Sample D Male 14.9
Superior colliculi
nTPM: 17.8
Samples: 4

Max nTPM: 23.5
Min nTPM: 14.7
Sample A Female 17.2
Sample B Female 23.5
Sample C Male 14.7
Sample D Male 15.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 36.6
Min nTPM: 34.6
Sample A Male 36.2
Sample B Male 34.6
Sample C Female 36.3
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
77925715 Antisense, RP_070219_02_A08, Mouse strain C57BL/6J (56 days, male) 0.2
1543 Antisense, RP_Baylor_103260, Mouse strain C57BL/6J (56 days, male) 0.1
1544 Antisense, RP_Baylor_103260, Mouse strain C57BL/6J (56 days, male) 0.1
77874614 Antisense, RP_070219_02_A08, Mouse strain C57BL/6J (56 days, male) 0.1

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