We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS13 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.9
661
Tumor
0.8
473
Tumor
0.8
951
Tumor
0.7
331
Tumor
0.7
877
Tumor
0.7
743
Tumor
0.7
777
Tumor
0.7
671
Tumor
0.7
685
Tumor
0.6
663
Tumor
0.6
313
Tumor
0.5
411
Tumor
0.5
367
Tumor
0.5
385
Tumor
0.5
647
Tumor
0.5
545
Tumor
0.5
375
Tumor
0.5
865
Tumor
0.5
211
Tumor
0.5
665
Tumor
0.5
515
Tumor
0.5
1031
Tumor
0.5
957
Tumor
0.4
467
Tumor
0.4
297
Tumor
0.4
937
Tumor
0.4
431
Tumor
0.4
815
Tumor
0.4
227
Tumor
0.4
357
Tumor
0.4
1013
Tumor
0.4
965
Tumor
0.4
1025
Tumor
0.4
427
Tumor
0.4
527
Tumor
0.3
461
Tumor
0.3
383
Tumor
0.3
277
Tumor
0.3
413
Tumor
0.3
983
Tumor
0.3
943
Tumor
0.3
463
Tumor
0.3
271
Tumor
0.3
967
Tumor
0.3
351
Tumor
0.3
343
Tumor
0.3
447
Tumor
0.3
523
Tumor
0.3
1021
Tumor
0.3
615
Tumor
0.3
917
Tumor
0.3
391
Tumor
0.3
813
Tumor
0.3
311
Tumor
0.3
881
Tumor
0.3
355
Tumor
0.2
535
Tumor
0.2
851
Tumor
0.2
1015
Tumor
0.2
721
Tumor
0.2
818
Normal
0.2
283
Tumor
0.2
135
Tumor
0.2
641
Tumor
0.2
425
Tumor
0.2
483
Tumor
0.2
1041
Tumor
0.2
443
Tumor
0.2
471
Tumor
0.2
217
Tumor
0.2
161
Tumor
0.2
912
Normal
0.2
327
Tumor
0.2
817
Tumor
0.2
395
Tumor
0.2
387
Tumor
0.2
113
Tumor
0.2
285
Tumor
0.2
465
Tumor
0.2
341
Tumor
0.2
1046
Normal
0.2
923
Tumor
0.2
365
Tumor
0.2
697
Tumor
0.2
137
Tumor
0.2
563
Tumor
0.2
362
Normal
0.2
672
Normal
0.2
882
Normal
0.2
455
Tumor
0.2
1027
Tumor
0.2
636
Normal
0.2
393
Tumor
0.2
445
Tumor
0.1
963
Tumor
0.1
267
Tumor
0.1
727
Tumor
0.1
513
Tumor
0.1
124
Normal
0.1
884
Normal
0.1
477
Tumor
0.1
415
Tumor
0.1
195
Tumor
0.1
312
Normal
0.1
258
Normal
0.1
921
Tumor
0.1
537
Tumor
0.1
814
Normal
0.1
926
Normal
0.1
824
Normal
0.1
497
Tumor
0.1
573
Tumor
0.1
147
Tumor
0.1
384
Normal
0.1
737
Tumor
0.1
1026
Normal
0.1
952
Normal
0.1
785
Tumor
0.1
915
Tumor
0.1
534
Normal
0.1
436
Normal
0.1
662
Normal
0.1
628
Normal
0.1
564
Normal
0.1
567
Tumor
0.1
376
Normal
0.1
724
Normal
0.1
187
Tumor
0.1
141
Tumor
0.1
755
Tumor
0.1
112
Tumor
0.1
953
Tumor
0.1
344
Normal
0.1
268
Normal
0.1
434
Normal
0.1
464
Normal
0.1
956
Normal
0.1
873
Tumor
0.1
616
Normal
0.1
572
Normal
0.1
571
Tumor
0.1
944
Normal
0.1
123
Tumor
0.1
262
Normal
0.1
481
Tumor
0.1
218
Normal
0.1
778
Normal
0.1
127
Tumor
0.1
423
Tumor
0.1
938
Normal
0.1
328
Normal
0.1
232
Normal
0.1
358
Normal
0.1
695
Tumor
0.1
388
Normal
0.1
922
Normal
0.1
191
Tumor
0.1
332
Normal
0.1
493
Tumor
0.1
126
Normal
0.1
627
Tumor
0.1
361
Tumor
0.1
746
Normal
0.1
955
Tumor
0.1
498
Normal
0.1
213
Tumor
0.1
528
Normal
0.1
342
Normal
0.1
426
Normal
0.1
298
Normal
0.1
446
Normal
0.1
352
Normal
0.1
414
Normal
0.1
664
Normal
0.1
756
Normal
0.1
975
Tumor
0.1
666
Normal
0.1
188
Normal
0.1
452
Normal
0.1
1043
Tumor
0.1
488
Normal
0.1
618
Normal
0.1
1044
Normal
0.1
984
Normal
0.1
396
Normal
0.1
185
Tumor
0.1
222
Normal
0.1
314
Normal
0.1
435
Tumor
0.1
272
Normal
0.0
1032
Normal
0.0
196
Normal
0.0
713
Tumor
0.0
468
Normal
0.0
356
Normal
0.0
862
Normal
0.0
428
Normal
0.0
858
Normal
0.0
745
Tumor
0.0
128
Normal
0.0
462
Normal
0.0
883
Tumor
0.0
278
Normal
0.0
568
Normal
0.0
867
Tumor
0.0
517
Tumor
0.0
364
Normal
0.0
1016
Normal
0.0
366
Normal
0.0
484
Normal
0.0
526
Normal
0.0
424
Normal
0.0
518
Normal
0.0
816
Normal
0.0
284
Normal
0.0
433
Tumor
0.0
448
Normal
0.0
257
Tumor
0.0
221
Tumor
0.0
635
Tumor
0.0
574
Normal
0.0
494
Normal
0.0
482
Normal
0.0
786
Normal
0.0
186
Normal
0.0
878
Normal
0.0
918
Normal
0.0
913
Tumor
0.0
114
Normal
0.0
1022
Normal
0.0
111
Normal
0.0
363
Tumor
0.0
421
Tumor
0.0
492
Normal
0.0
224
Normal
0.0
648
Normal
0.0
212
Normal
0.0
924
Normal
0.0
456
Normal
0.0
394
Normal
0.0
916
Normal
N/A
412
Normal
0.0
546
Normal
0.0
968
Normal
0.0
148
Normal
0.0
866
Normal
0.0
554
Normal
0.0
863
Tumor
0.0
558
Normal
0.0
422
Normal
0.0
698
Normal
0.0
823
Tumor
0.0
416
Normal
0.0
525
Tumor
0.0
1028
Normal
0.0
536
Normal
0.0
386
Normal
0.0
368
Normal
0.0
557
Tumor
0.0
978
Normal
0.0
392
Normal
0.0
911
Tumor
0.0
966
Normal
0.0
914
Normal
0.0
864
Normal
0.0
142
Normal
0.0
231
Tumor
0.0
353
Tumor
0.0
954
Normal
0.0
444
Normal
0.0
981
Tumor
0.0
192
Normal
0.0
874
Normal
0.0
432
Normal
0.0
354
Normal
0.0
696
Normal
0.0
286
Normal
0.0
722
Normal
0.0
686
Normal
0.0
964
Normal
0.0
857
Tumor
0.0
228
Normal
0.0
617
Tumor
0.0
1014
Normal
0.0
478
Normal
0.0
728
Normal
0.0
852
Normal
-0.1
1042
Normal
-0.1
958
Normal
-0.1
1045
Tumor
-0.1
715
Tumor
-0.1
982
Normal
-0.1
524
Normal
-0.1
742
Normal
-0.1
136
Normal
-0.1
642
Normal
-0.1
472
Normal
-0.1
214
Normal
-0.1
132
Normal
-0.1
976
Normal
-0.1
723
Tumor
-0.1
738
Normal
-0.1
451
Tumor
-0.1
516
Normal
-0.1
223
Tumor
-0.1
138
Normal
-0.1
162
Normal
-0.1
744
Normal
-0.1
466
Normal
-0.1
716
Normal
-0.1
925
Tumor
-0.1
868
Normal
-0.1
474
Normal
-0.1
487
Tumor
-0.1
514
Normal
-0.1
714
Normal
-0.1
553
Tumor
-0.1
538
Normal
-0.1
533
Tumor
-0.1
125
Tumor
-0.1
171
Tumor
-0.1
491
Tumor
-0.1
977
Tumor
-0.1
172
Normal
-0.2
261
Tumor
-0.2
146
Normal
-0.2
861
Tumor
-0.2
145
Tumor
-0.2
741
Tumor
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
