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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
964.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
96.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
70.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
69.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
61.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
54.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
53.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
50.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
44.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
36.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
28.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
122.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
92.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
64.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
42.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
1.7
863
Tumor
1.3
743
Tumor
1.3
455
Tumor
1.2
525
Tumor
1.2
535
Tumor
1.1
536
Normal
1.1
545
Tumor
0.9
131
Tumor
0.9
421
Tumor
0.8
461
Tumor
0.8
311
Tumor
0.7
267
Tumor
0.7
355
Tumor
0.7
975
Tumor
0.7
573
Tumor
0.7
483
Tumor
0.7
881
Tumor
0.7
357
Tumor
0.7
817
Tumor
0.7
491
Tumor
0.6
813
Tumor
0.6
343
Tumor
0.6
375
Tumor
0.6
331
Tumor
0.6
857
Tumor
0.6
367
Tumor
0.6
185
Tumor
0.6
557
Tumor
0.6
814
Normal
0.5
297
Tumor
0.5
852
Normal
0.5
755
Tumor
0.5
192
Normal
0.5
124
Normal
0.5
223
Tumor
0.5
1028
Normal
0.5
387
Tumor
0.5
492
Normal
0.5
498
Normal
0.5
538
Normal
0.4
958
Normal
0.4
444
Normal
0.4
313
Tumor
0.4
697
Tumor
0.4
231
Tumor
0.4
344
Normal
0.4
823
Tumor
0.4
137
Tumor
0.4
445
Tumor
0.4
943
Tumor
0.4
423
Tumor
0.4
567
Tumor
0.4
447
Tumor
0.4
415
Tumor
0.4
923
Tumor
0.3
195
Tumor
0.3
126
Normal
0.3
268
Normal
0.3
664
Normal
0.3
141
Tumor
0.3
224
Normal
0.3
471
Tumor
0.3
425
Tumor
0.3
354
Normal
0.3
218
Normal
0.3
214
Normal
0.3
342
Normal
0.2
452
Normal
0.2
478
Normal
0.2
386
Normal
0.2
111
Normal
0.2
384
Normal
0.2
412
Normal
0.2
642
Normal
0.2
161
Tumor
0.2
627
Tumor
0.2
392
Normal
0.2
874
Normal
0.2
426
Normal
0.2
628
Normal
0.2
524
Normal
0.2
146
Normal
0.2
258
Normal
0.2
671
Tumor
0.2
388
Normal
0.2
963
Tumor
0.2
913
Tumor
0.2
283
Tumor
0.2
394
Normal
0.2
672
Normal
0.2
816
Normal
0.2
563
Tumor
0.2
278
Normal
0.2
716
Normal
0.2
713
Tumor
0.1
636
Normal
0.1
428
Normal
0.1
1042
Normal
0.1
191
Tumor
0.1
262
Normal
0.1
527
Tumor
0.1
135
Tumor
0.1
878
Normal
0.1
448
Normal
0.1
721
Tumor
0.1
1032
Normal
0.1
976
Normal
0.1
393
Tumor
0.1
396
Normal
0.1
474
Normal
0.1
385
Tumor
0.1
516
Normal
0.1
138
Normal
0.1
777
Tumor
0.1
616
Normal
0.1
228
Normal
0.1
361
Tumor
0.1
284
Normal
0.1
868
Normal
0.1
312
Normal
0.1
414
Normal
0.1
422
Normal
0.1
982
Normal
0.1
883
Tumor
0.1
641
Tumor
0.1
145
Tumor
0.1
572
Normal
0.1
424
Normal
0.1
568
Normal
0.1
358
Normal
0.1
666
Normal
0.1
362
Normal
0.1
574
Normal
0.1
257
Tumor
0.1
534
Normal
0.1
615
Tumor
0.0
714
Normal
0.0
352
Normal
0.0
142
Normal
0.0
465
Tumor
0.0
468
Normal
0.0
515
Tumor
0.0
558
Normal
0.0
916
Normal
0.0
484
Normal
0.0
464
Normal
0.0
884
Normal
0.0
956
Normal
0.0
618
Normal
0.0
1026
Normal
0.0
114
Normal
0.0
456
Normal
0.0
954
Normal
0.0
213
Tumor
0.0
472
Normal
0.0
686
Normal
0.0
917
Tumor
0.0
722
Normal
0.0
968
Normal
0.0
187
Tumor
0.0
136
Normal
0.0
546
Normal
0.0
332
Normal
0.0
744
Normal
0.0
196
Normal
0.0
528
Normal
0.0
232
Normal
0.0
866
Normal
0.0
746
Normal
0.0
1022
Normal
0.0
785
Tumor
-0.1
523
Tumor
-0.1
742
Normal
-0.1
937
Tumor
-0.1
696
Normal
-0.1
212
Normal
-0.1
493
Tumor
-0.1
647
Tumor
-0.1
272
Normal
-0.1
222
Normal
-0.1
211
Tumor
-0.1
364
Normal
-0.1
466
Normal
-0.1
186
Normal
-0.1
715
Tumor
-0.1
554
Normal
-0.1
918
Normal
-0.1
952
Normal
-0.1
298
Normal
-0.1
132
Normal
-0.1
462
Normal
-0.1
217
Tumor
-0.1
648
Normal
-0.1
862
Normal
-0.1
938
Normal
-0.1
188
Normal
-0.1
964
Normal
-0.1
434
Normal
-0.1
416
Normal
-0.1
383
Tumor
-0.2
662
Normal
-0.2
482
Normal
-0.2
365
Tumor
-0.2
277
Tumor
-0.2
953
Tumor
-0.2
1027
Tumor
-0.2
882
Normal
-0.2
314
Normal
-0.2
261
Tumor
-0.2
286
Normal
-0.2
617
Tumor
-0.2
366
Normal
-0.2
487
Tumor
-0.2
488
Normal
-0.2
984
Normal
-0.2
737
Tumor
-0.2
494
Normal
-0.2
756
Normal
-0.2
944
Normal
-0.2
395
Tumor
-0.2
477
Tumor
-0.2
376
Normal
-0.2
514
Normal
-0.2
864
Normal
-0.2
867
Tumor
-0.2
413
Tumor
-0.2
451
Tumor
-0.2
432
Normal
-0.2
738
Normal
-0.2
1044
Normal
-0.2
467
Tumor
-0.3
328
Normal
-0.3
924
Normal
-0.3
518
Normal
-0.3
1046
Normal
-0.3
955
Tumor
-0.3
741
Tumor
-0.3
537
Tumor
-0.3
914
Normal
-0.3
778
Normal
-0.3
698
Normal
-0.3
341
Tumor
-0.3
912
Normal
-0.3
526
Normal
-0.3
368
Normal
-0.3
148
Normal
-0.3
564
Normal
-0.3
162
Normal
-0.3
824
Normal
-0.3
786
Normal
-0.3
1021
Tumor
-0.3
818
Normal
-0.4
663
Tumor
-0.4
172
Normal
-0.4
446
Normal
-0.4
497
Tumor
-0.4
363
Tumor
-0.4
533
Tumor
-0.4
481
Tumor
-0.4
728
Normal
-0.4
966
Normal
-0.4
922
Normal
-0.4
353
Tumor
-0.4
473
Tumor
-0.4
858
Normal
-0.4
723
Tumor
-0.5
685
Tumor
-0.5
436
Normal
-0.5
1045
Tumor
-0.5
571
Tumor
-0.5
411
Tumor
-0.5
433
Tumor
-0.5
951
Tumor
-0.5
635
Tumor
-0.5
1014
Normal
-0.5
128
Normal
-0.5
271
Tumor
-0.5
356
Normal
-0.5
1016
Normal
-0.5
745
Tumor
-0.6
463
Tumor
-0.6
665
Tumor
-0.7
1013
Tumor
-0.7
978
Normal
-0.7
877
Tumor
-0.7
861
Tumor
-0.7
391
Tumor
-0.7
147
Tumor
-0.8
926
Normal
-0.8
921
Tumor
-0.8
925
Tumor
-0.8
1015
Tumor
-0.8
327
Tumor
-0.8
443
Tumor
-0.8
221
Tumor
-0.8
695
Tumor
-0.8
911
Tumor
-0.9
977
Tumor
-0.9
873
Tumor
-0.9
227
Tumor
-0.9
127
Tumor
-1.0
865
Tumor
-1.0
915
Tumor
-1.0
957
Tumor
-1.0
351
Tumor
-1.0
983
Tumor
-1.0
113
Tumor
-1.1
513
Tumor
-1.1
517
Tumor
-1.2
435
Tumor
-1.2
431
Tumor
-1.2
171
Tumor
-1.2
553
Tumor
-1.3
123
Tumor
-1.3
112
Tumor
-1.4
1025
Tumor
-1.4
724
Normal
-1.4
125
Tumor
-1.5
661
Tumor
-1.5
1043
Tumor
-1.5
285
Tumor
-1.6
727
Tumor
-1.6
1041
Tumor
-1.7
967
Tumor
-1.7
815
Tumor
-1.7
981
Tumor
-1.8
1031
Tumor
-1.9
851
Tumor
-1.9
965
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.