MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA Brain:55.2 nTPM
GTEx:48.4 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Mouse:21.2 nTPM
Allen mouse:20.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.6
2586 Male, age 75, left hemisphere 66.6
2828 Female, age 72, unknown 55.0
1827 Male, age 72, unknown 52.8
2411 Female, age 72, unknown 51.5
1870 Female, age 42, unknown 49.5
1833 Male, age 53, unknown 47.6
2666 Male, age 74, left hemisphere 46.3
2019 Male, age 18, unknown 42.9
1830 Male, age 51, unknown 42.8
2219 Male, age 76, both hemispheres 41.2
Dorsal raphe nucleus
nTPM: 53.9
2298 Female, age 72, unknown 56.3
1828 Male, age 53, unknown 54.9
2750 Male, age 76, both hemispheres 53.3
2016 Female, age 72, unknown 52.8
2047 Male, age 72, unknown 52.1
Inferior colliculus
nTPM: 47.6
2849 Male, age 72, unknown 50.3
1848 Female, age 42, unknown 50.2
2097 Female, age 72, unknown 47.9
1890 Male, age 53, unknown 42.0
Median raphe nucleus
nTPM: 53.8
2220 Male, age 76, midline 53.8
Periaquaductal grey, anterior
nTPM: 55.2
1795 Male, age 51, unknown 56.2
2502 Female, age 75, unknown 55.1
1947 Male, age 18, unknown 54.2
Periaquaductal grey, dorsal
nTPM: 50.7
2850 Male, age 76, both hemispheres 53.6
1840 Male, age 53, unknown 52.7
2464 Female, age 72, unknown 49.9
1831 Male, age 72, unknown 46.4
Periaquaductal grey, lateral
nTPM: 48.1
2140 Male, age 76, both hemispheres 55.8
2053 Male, age 18, unknown 48.7
2272 Male, age 74, both hemispheres 39.8
Pretectal area
nTPM: 50.7
1817 Female, age 42, unknown 56.2
1815 Male, age 53, unknown 54.9
2007 Male, age 72, unknown 53.5
1816 Male, age 51, unknown 52.7
2825 Male, age 18, unknown 51.8
2667 Female, age 75, unknown 51.7
1944 Female, age 72, unknown 50.8
2407 Male, age 75, both hemispheres 48.4
2224 Female, age 72, unknown 47.9
2316 Male, age 76, right hemisphere 45.9
2273 Male, age 74, both hemispheres 44.3
Red nucleus
nTPM: 48.4
1821 Female, age 72, unknown 52.1
2823 Male, age 76, right hemisphere 51.5
2769 Male, age 72, unknown 50.3
2725 Female, age 75, unknown 50.2
2227 Male, age 72, unknown 49.7
2588 Male, age 74, left hemisphere 49.2
2503 Female, age 72, unknown 48.2
1865 Male, age 51, unknown 48.1
1954 Female, age 42, unknown 47.6
1904 Male, age 53, unknown 45.7
2785 Male, age 18, unknown 44.7
2584 Male, age 75, left hemisphere 43.6
Substantia nigra
nTPM: 49.9
2699 Male, age 18, unknown 57.2
1916 Female, age 42, unknown 56.7
1851 Male, age 51, unknown 54.1
2665 Male, age 74, both hemispheres 51.0
1889 Female, age 72, unknown 50.0
2583 Male, age 75, right hemisphere 48.2
1941 Male, age 53, unknown 47.3
2241 Male, age 72, unknown 46.8
2590 Female, age 75, unknown 45.7
2409 Female, age 72, unknown 42.3
Superior colliculus
nTPM: 51.9
2664 Male, age 75, both hemispheres 65.9
1796 Male, age 53, unknown 60.0
2261 Male, age 18, unknown 54.0
2668 Female, age 75, unknown 52.9
2087 Female, age 72, unknown 51.5
1839 Male, age 51, unknown 48.5
1995 Male, age 72, unknown 47.9
1913 Female, age 42, unknown 47.5
2587 Male, age 74, left hemisphere 47.3
1895 Male, age 76, right hemisphere 43.4
Ventral tegmental area
nTPM: 51.6
1915 Female, age 42, unknown 55.1
1942 Male, age 51, unknown 54.6
2218 Male, age 76, both hemispheres 50.5
2410 Female, age 72, unknown 50.5
2021 Male, age 53, unknown 49.8
2223 Female, age 72, unknown 49.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 48.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.4
Samples: 139

Max nTPM: 119.5
Min nTPM: 20.2
Std nTPM: 11.1
Median nTPM: 46.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 119.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 74.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 73.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 73.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 72.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 68.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 68.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 67.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 66.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 65.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 64.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.6
FF:10158-103A5 76 years, female 69.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 24.2
Min nTPM: 16.3
Sample A Male 23.2
Sample B Male 21.2
Sample C Female 16.3
Sample D Female 24.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.2
199204 Antisense, RP_040604_02_D06, Mouse strain C57BL/6J (56 days, male) 20.2

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