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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 52.5
2090
Male, age 80, both hemispheres
58.2
2188
Female, age 91, both hemispheres
55.1
1984
Male, age 76, both hemispheres
49.6
2301
Female, age 85, both hemispheres
47.1
Dorsal cochlear nucleus nTPM: 50.2
2802
Male, age 74, right hemisphere
52.2
2187
Female, age 91, both hemispheres
50.5
2058
Male, age 76, both hemispheres
50.1
2378
Male, age 80, both hemispheres
50.1
2370
Male, age 61, both hemispheres
47.9
Dorsal tegmental nucleus nTPM: 51.5
2083
Male, age 80, both hemispheres
55.6
2358
Male, age 61, both hemispheres
54.7
2326
Male, age 74, both hemispheres
49.5
1936
Male, age 76, left hemisphere
46.4
Dorsolateral tegmental area nTPM: 53.4
2337
Male, age 61, both hemispheres
62.6
2654
Male, age 80, both hemispheres
53.3
2360
Male, age 74, both hemispheres
50.9
2751
Female, age 85, both hemispheres
50.9
2141
Male, age 76, both hemispheres
49.3
Kolliker-Fuse nucleus nTPM: 53.9
2315
Male, age 76, right hemisphere
56.8
2793
Female, age 91, left hemisphere
55.1
2163
Male, age 80, both hemispheres
49.8
Lateral lemniscal nuclei nTPM: 48.7
2320
Female, age 91, left hemisphere
52.4
2746
Female, age 85, left hemisphere
51.4
2453
Male, age 74, right hemisphere
48.5
2169
Male, age 76, both hemispheres
47.4
2036
Male, age 80, both hemispheres
44.0
Lateral parabrachial nucleus nTPM: 53.5
2792
Male, age 76, both hemispheres
55.6
2139
Female, age 85, right hemisphere
54.1
2013
Male, age 80, both hemispheres
53.1
2790
Male, age 61, both hemispheres
51.0
Lateral vestibular nucleus nTPM: 50.0
2311
Male, age 80, both hemispheres
52.5
2184
Male, age 76, both hemispheres
47.6
Locus coeruleus nTPM: 50.5
2123
Female, age 91, both hemispheres
57.3
2014
Male, age 55, unknown
54.4
1980
Male, age 76, both hemispheres
54.1
2317
Female, age 72, unknown
51.8
2720
Male, age 74, both hemispheres
49.6
2162
Male, age 80, both hemispheres
46.3
2788
Male, age 74, unknown
39.9
Medial parabrachial nucleus nTPM: 52.7
2463
Female, age 85, right hemisphere
56.1
2170
Female, age 91, both hemispheres
55.2
2156
Male, age 61, both hemispheres
53.8
2786
Male, age 76, both hemispheres
49.3
2854
Male, age 80, both hemispheres
48.9
Medial periolivary nuclei nTPM: 50.5
2081
Male, age 80, both hemispheres
53.6
2063
Male, age 76, both hemispheres
52.9
2791
Male, age 74, right hemisphere
50.0
2458
Female, age 91, both hemispheres
49.1
2171
Female, age 85, both hemispheres
46.7
Motor facial nucleus nTPM: 49.0
2062
Male, age 76, both hemispheres
53.6
2365
Male, age 74, right hemisphere
52.7
2126
Male, age 61, both hemispheres
49.0
2697
Female, age 85, both hemispheres
47.6
2327
Male, age 80, both hemispheres
45.7
2795
Female, age 91, both hemispheres
45.6
Motor trigeminal nucleus nTPM: 51.3
2335
Male, age 61, both hemispheres
54.3
2560
Male, age 74, both hemispheres
51.5
2079
Male, age 80, both hemispheres
51.2
2321
Female, age 91, both hemispheres
50.8
2309
Male, age 76, both hemispheres
48.5
Nuclei of the trapezoid body nTPM: 46.5
1983
Male, age 76, both hemispheres
53.2
2166
Male, age 80, both hemispheres
47.0
2159
Male, age 61, both hemispheres
46.2
2735
Female, age 85, both hemispheres
44.8
2368
Female, age 91, both hemispheres
41.4
Nucleus raphe magnus nTPM: 47.7
2051
Male, age 76, both hemispheres
49.1
2160
Male, age 61, both hemispheres
48.5
2328
Male, age 80, both hemispheres
48.1
2455
Male, age 74, both hemispheres
47.3
2172
Female, age 85, both hemispheres
47.0
2459
Female, age 91, both hemispheres
46.1
Paramedian reticular nucleus nTPM: 45.8
2057
Male, age 80, both hemispheres
52.4
2050
Female, age 85, both hemispheres
48.3
2313
Male, age 61, both hemispheres
45.6
2052
Male, age 76, both hemispheres
36.8
Pedunculopontine tegmental nucleus nTPM: 50.1
2338
Male, age 61, both hemispheres
50.5
1921
Female, age 85, both hemispheres
50.0
2334
Male, age 80, both hemispheres
49.7
Pontine nuclei nTPM: 53.4
2787
Female, age 85, both hemispheres
59.5
2115
Male, age 80, left hemisphere
55.9
2319
Female, age 91, both hemispheres
55.3
2109
Female, age 72, unknown
54.7
1968
Male, age 76, left hemisphere
53.8
1863
Male, age 55, unknown
52.8
2454
Male, age 74, left hemisphere
50.0
2727
Male, age 61, right hemisphere
44.7
Pontine raphe nucleus nTPM: 49.9
2122
Female, age 85, midline
50.7
2853
Male, age 76, midline
49.2
Posteroventral cochlear nucleus nTPM: 51.5
2135
Female, age 91, both hemispheres
59.1
2070
Male, age 76, both hemispheres
53.0
2341
Male, age 80, both hemispheres
50.5
2371
Male, age 61, both hemispheres
47.7
2752
Female, age 85, both hemispheres
47.4
Principal sensory trigeminal nucleus nTPM: 47.5
2367
Female, age 91, left hemisphere
50.7
2158
Male, age 61, both hemispheres
48.3
2324
Male, age 76, both hemispheres
46.5
2008
Male, age 80, left hemisphere
44.5
Reticular pontine nucleus, caudal nTPM: 50.4
2092
Male, age 76, both hemispheres
54.0
2457
Female, age 91, both hemispheres
49.8
2559
Male, age 74, both hemispheres
49.7
2332
Male, age 80, right hemisphere
48.2
Reticular pontine nucleus, oral nTPM: 50.4
2366
Female, age 91, both hemispheres
53.0
1939
Male, age 80, both hemispheres
51.4
2012
Female, age 85, both hemispheres
50.9
2167
Male, age 76, both hemispheres
49.6
2361
Male, age 74, both hemispheres
47.3
Reticulotegmental nucleus nTPM: 50.0
2452
Male, age 74, both hemispheres
52.7
2333
Male, age 80, both hemispheres
51.7
2322
Female, age 91, both hemispheres
50.3
2325
Male, age 76, both hemispheres
45.4
Spinal trigeminal nucleus, oral nTPM: 49.9
1978
Male, age 76, both hemispheres
51.4
2737
Female, age 85, both hemispheres
49.4
2164
Male, age 80, both hemispheres
48.9
Subcoeruleus area nTPM: 49.9
2323
Female, age 91, left hemisphere
52.4
2369
Female, age 85, left hemisphere
50.3
2089
Male, age 76, left hemisphere
49.5
2451
Male, age 74, both hemispheres
49.1
1958
Male, age 80, both hemispheres
48.0
Superior olive nTPM: 50.8
2364
Male, age 74, right hemisphere
53.4
2020
Male, age 76, both hemispheres
52.6
1875
Female, age 85, both hemispheres
51.3
2329
Male, age 80, right hemisphere
49.9
2561
Female, age 91, both hemispheres
46.5
Ventral periolivary nuclei nTPM: 46.3
2023
Male, age 76, both hemispheres
48.6
2165
Male, age 80, both hemispheres
48.0
2130
Female, age 85, both hemispheres
46.9
2794
Female, age 91, left hemisphere
41.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 48.7
2449
Male, age 74, both hemispheres
50.2
2456
Female, age 91, both hemispheres
49.3
1959
Male, age 76, both hemispheres
48.9
2359
Male, age 61, both hemispheres
48.5
2161
Male, age 80, both hemispheres
48.4
2840
Female, age 85, both hemispheres
47.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.