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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.4
Sample id
Sample description
nTPM
Amygdala nTPM: 54.4
2814
Male, age 76, right hemisphere
59.1
1987
Female, age 91, left hemisphere
55.3
2695
Female, age 67, right hemisphere
54.4
2514
Male, age 75, right hemisphere
53.0
2517
Female, age 94, left hemisphere
50.0
Basal amygdala nTPM: 49.7
2609
Male, age 75, right hemisphere
55.1
2685
Female, age 94, left hemisphere
53.0
2110
Male, age 80, left hemisphere
52.8
2243
Female, age 91, right hemisphere
49.0
1955
Male, age 76, both hemispheres
45.3
2827
Female, age 67, right hemisphere
42.7
Central amygdala nTPM: 50.6
1905
Male, age 76, both hemispheres
54.9
2826
Female, age 94, left hemisphere
51.9
2515
Male, age 75, right hemisphere
50.0
2239
Male, age 80, left hemisphere
48.8
2701
Female, age 91, right hemisphere
47.4
Corticomedial amygdala nTPM: 46.8
2242
Female, age 91, right hemisphere
49.5
2829
Male, age 80, left hemisphere
49.2
2428
Male, age 75, right hemisphere
48.4
2429
Female, age 94, left hemisphere
48.3
2535
Female, age 67, right hemisphere
44.5
2240
Male, age 76, both hemispheres
41.0
Lateral amygdala nTPM: 50.2
1883
Male, age 76, both hemispheres
52.6
2516
Male, age 75, right hemisphere
51.7
2534
Female, age 94, left hemisphere
51.7
2255
Female, age 91, right hemisphere
50.9
2256
Male, age 80, left hemisphere
49.7
2830
Female, age 67, right hemisphere
44.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 38.7
Samples: 152
Max nTPM: 62.0
Min nTPM: 22.8
Std nTPM: 5.4
Median nTPM: 38.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
62.0
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
51.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
50.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
49.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
48.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
48.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
47.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
47.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
46.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
46.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
45.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
45.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
45.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
45.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
45.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
44.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
44.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
44.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
44.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
44.1
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
43.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
43.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
43.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
43.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
43.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
43.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
42.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
42.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
42.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
42.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
42.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
42.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
42.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
42.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
42.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
42.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
42.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
42.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
42.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
42.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
42.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
41.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
41.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
41.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
41.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
41.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
41.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
41.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
40.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
40.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
40.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
40.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
40.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
40.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
40.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
40.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
40.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
40.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
40.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
39.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
39.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
39.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
39.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
39.7
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
39.6
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
39.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
39.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
39.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
39.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
39.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
39.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
39.0
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
38.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
38.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
38.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
38.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
38.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
38.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
38.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
38.5
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
38.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
38.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
38.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
38.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
38.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
38.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
38.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
37.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
37.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
37.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
37.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
37.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
37.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
37.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
37.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
37.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
37.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
37.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
37.0
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
36.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
36.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
36.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
36.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
36.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
36.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
36.4
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
36.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
36.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
36.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
36.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
36.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
36.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
35.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
35.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
35.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
35.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
35.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
35.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
35.3
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
35.0
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
34.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
34.9
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
34.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
34.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
34.7
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
34.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
34.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
34.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
34.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
33.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
33.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
33.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
33.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
33.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
33.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
32.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
32.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
31.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
31.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
31.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
31.2
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
30.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
30.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
29.6
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
28.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
27.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
27.3
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
27.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
25.6
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
24.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
24.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
22.8
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.