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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
51.9
nTPM
HPA Brain:
59.5
nTPM
GTEx:
51.9
nTPM
FANTOM5:
110.3
Scaled Tags Per Million
Pig:
90.1
nTPM
Mouse:
67.0
nTPM
Allen mouse:
0.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 54.4
1870
Female, age 42, unknown
59.7
1827
Male, age 72, unknown
59.5
2019
Male, age 18, unknown
58.3
2411
Female, age 72, unknown
57.1
1830
Male, age 51, unknown
54.7
1833
Male, age 53, unknown
54.7
2666
Male, age 74, left hemisphere
51.4
2828
Female, age 72, unknown
51.3
2219
Male, age 76, both hemispheres
49.0
2586
Male, age 75, left hemisphere
48.7
Dorsal raphe nucleus nTPM: 54.4
2016
Female, age 72, unknown
62.6
2298
Female, age 72, unknown
54.7
1828
Male, age 53, unknown
54.2
2750
Male, age 76, both hemispheres
53.4
2047
Male, age 72, unknown
47.2
Inferior colliculus nTPM: 56.0
1848
Female, age 42, unknown
58.0
2849
Male, age 72, unknown
56.3
2097
Female, age 72, unknown
56.0
1890
Male, age 53, unknown
53.9
Median raphe nucleus nTPM: 46.7
2220
Male, age 76, midline
46.7
Periaquaductal grey, anterior nTPM: 54.4
1947
Male, age 18, unknown
57.6
2502
Female, age 75, unknown
56.1
1795
Male, age 51, unknown
49.6
Periaquaductal grey, dorsal nTPM: 58.6
1840
Male, age 53, unknown
64.1
2850
Male, age 76, both hemispheres
58.5
1831
Male, age 72, unknown
57.7
2464
Female, age 72, unknown
54.2
Periaquaductal grey, lateral nTPM: 55.4
2140
Male, age 76, both hemispheres
57.5
2053
Male, age 18, unknown
57.3
2272
Male, age 74, both hemispheres
51.4
Pretectal area nTPM: 55.8
2007
Male, age 72, unknown
61.2
1815
Male, age 53, unknown
60.6
1817
Female, age 42, unknown
60.5
1816
Male, age 51, unknown
56.3
2825
Male, age 18, unknown
56.3
1944
Female, age 72, unknown
55.7
2224
Female, age 72, unknown
54.8
2316
Male, age 76, right hemisphere
54.4
2273
Male, age 74, both hemispheres
53.4
2407
Male, age 75, both hemispheres
51.8
2667
Female, age 75, unknown
48.7
Red nucleus nTPM: 59.5
2503
Female, age 72, unknown
69.0
1821
Female, age 72, unknown
64.8
1865
Male, age 51, unknown
63.5
2725
Female, age 75, unknown
63.4
1954
Female, age 42, unknown
61.4
2588
Male, age 74, left hemisphere
60.0
2823
Male, age 76, right hemisphere
57.5
1904
Male, age 53, unknown
55.5
2769
Male, age 72, unknown
55.1
2785
Male, age 18, unknown
55.0
2584
Male, age 75, left hemisphere
54.2
2227
Male, age 72, unknown
54.1
Substantia nigra nTPM: 52.9
1889
Female, age 72, unknown
58.8
2583
Male, age 75, right hemisphere
55.4
2590
Female, age 75, unknown
55.2
2241
Male, age 72, unknown
54.8
2409
Female, age 72, unknown
52.3
2665
Male, age 74, both hemispheres
52.2
1941
Male, age 53, unknown
51.7
2699
Male, age 18, unknown
51.7
1851
Male, age 51, unknown
51.0
1916
Female, age 42, unknown
46.4
Superior colliculus nTPM: 56.6
1995
Male, age 72, unknown
61.7
1895
Male, age 76, right hemisphere
61.3
1913
Female, age 42, unknown
60.4
2587
Male, age 74, left hemisphere
60.2
1839
Male, age 51, unknown
58.4
2668
Female, age 75, unknown
55.8
1796
Male, age 53, unknown
53.5
2664
Male, age 75, both hemispheres
52.7
2261
Male, age 18, unknown
52.2
2087
Female, age 72, unknown
50.2
Ventral tegmental area nTPM: 49.5
2410
Female, age 72, unknown
52.1
2223
Female, age 72, unknown
50.5
1915
Female, age 42, unknown
50.2
1942
Male, age 51, unknown
49.8
2021
Male, age 53, unknown
49.4
2218
Male, age 76, both hemispheres
44.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 51.9
Samples: 139
Max nTPM: 116.2
Min nTPM: 31.9
Std nTPM: 14.4
Median nTPM: 47.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
116.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
103.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
93.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
90.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
88.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
85.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
83.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
82.6
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
82.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
79.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
78.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
77.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
73.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
71.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
70.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
67.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
66.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
65.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
63.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
63.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
63.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
62.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
62.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
61.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
61.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
61.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
60.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
59.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
59.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
59.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
58.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
58.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
57.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
57.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
57.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
57.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
56.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
56.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
56.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
55.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
55.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
55.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
54.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
54.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
54.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
53.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
52.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
52.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
52.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
52.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
52.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
51.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
50.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
50.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
50.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
50.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
50.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
50.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
50.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
50.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
49.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
49.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
49.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
48.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
48.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
48.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
48.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
48.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
48.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
47.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
47.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
47.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
47.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
47.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
47.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
47.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
47.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
47.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
47.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
47.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
47.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
46.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
46.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
46.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
45.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
45.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
45.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
45.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
45.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
45.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
45.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
44.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
44.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
44.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
44.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
44.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
43.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
43.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
42.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
42.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
42.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
42.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
42.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
41.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
41.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
41.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
41.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
41.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
41.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
41.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
40.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
40.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
40.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
40.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
40.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
40.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
40.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
40.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
38.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
38.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
38.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
38.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
38.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
38.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
38.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
37.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
37.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
37.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
36.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
36.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
35.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
35.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
34.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
34.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
33.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
31.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 67.0
Samples: 4
Max nTPM: 72.7
Min nTPM: 61.6
Sample A
Male
61.6
Sample B
Male
69.5
Sample C
Female
72.7
Sample D
Female
64.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.