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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
33.0
nTPM
HPA Brain:
144.4
nTPM
GTEx:
33.0
nTPM
FANTOM5:
24.0
Scaled Tags Per Million
Pig:
55.0
nTPM
Mouse:
67.9
nTPM
Allen mouse:
0.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 133.6
2586
Male, age 75, left hemisphere
184.5
2219
Male, age 76, both hemispheres
152.5
1827
Male, age 72, unknown
137.8
2666
Male, age 74, left hemisphere
137.3
2828
Female, age 72, unknown
134.4
1833
Male, age 53, unknown
130.0
2411
Female, age 72, unknown
116.2
2019
Male, age 18, unknown
114.7
1830
Male, age 51, unknown
114.4
1870
Female, age 42, unknown
113.8
Dorsal raphe nucleus nTPM: 120.0
2047
Male, age 72, unknown
133.6
1828
Male, age 53, unknown
128.1
2750
Male, age 76, both hemispheres
113.5
2298
Female, age 72, unknown
112.4
2016
Female, age 72, unknown
112.3
Inferior colliculus nTPM: 121.1
2849
Male, age 72, unknown
143.1
1848
Female, age 42, unknown
123.9
1890
Male, age 53, unknown
114.0
2097
Female, age 72, unknown
103.3
Median raphe nucleus nTPM: 109.8
2220
Male, age 76, midline
109.8
Periaquaductal grey, anterior nTPM: 144.4
2502
Female, age 75, unknown
172.1
1795
Male, age 51, unknown
133.7
1947
Male, age 18, unknown
127.4
Periaquaductal grey, dorsal nTPM: 113.5
2464
Female, age 72, unknown
128.5
1840
Male, age 53, unknown
120.3
2850
Male, age 76, both hemispheres
105.6
1831
Male, age 72, unknown
99.5
Periaquaductal grey, lateral nTPM: 106.5
2140
Male, age 76, both hemispheres
114.8
2053
Male, age 18, unknown
106.4
2272
Male, age 74, both hemispheres
98.1
Pretectal area nTPM: 119.9
1816
Male, age 51, unknown
134.5
2667
Female, age 75, unknown
134.0
2007
Male, age 72, unknown
133.8
2825
Male, age 18, unknown
131.0
2407
Male, age 75, both hemispheres
124.6
2316
Male, age 76, right hemisphere
123.9
1944
Female, age 72, unknown
117.7
1817
Female, age 42, unknown
117.6
2224
Female, age 72, unknown
111.5
1815
Male, age 53, unknown
110.3
2273
Male, age 74, both hemispheres
80.0
Red nucleus nTPM: 118.3
2588
Male, age 74, left hemisphere
157.8
2584
Male, age 75, left hemisphere
151.2
2769
Male, age 72, unknown
135.2
2227
Male, age 72, unknown
124.2
2785
Male, age 18, unknown
121.0
2823
Male, age 76, right hemisphere
119.8
1904
Male, age 53, unknown
107.4
1954
Female, age 42, unknown
105.2
2503
Female, age 72, unknown
105.1
2725
Female, age 75, unknown
98.5
1865
Male, age 51, unknown
97.9
1821
Female, age 72, unknown
96.5
Substantia nigra nTPM: 134.1
2665
Male, age 74, both hemispheres
198.8
2699
Male, age 18, unknown
155.8
1941
Male, age 53, unknown
148.4
1916
Female, age 42, unknown
137.4
1851
Male, age 51, unknown
135.2
2583
Male, age 75, right hemisphere
131.0
1889
Female, age 72, unknown
117.3
2590
Female, age 75, unknown
114.0
2241
Male, age 72, unknown
103.5
2409
Female, age 72, unknown
99.6
Superior colliculus nTPM: 122.9
2664
Male, age 75, both hemispheres
175.5
1839
Male, age 51, unknown
130.4
2087
Female, age 72, unknown
127.4
1796
Male, age 53, unknown
126.6
1895
Male, age 76, right hemisphere
123.8
2668
Female, age 75, unknown
122.1
2587
Male, age 74, left hemisphere
117.3
2261
Male, age 18, unknown
115.5
1913
Female, age 42, unknown
99.3
1995
Male, age 72, unknown
90.7
Ventral tegmental area nTPM: 118.5
1942
Male, age 51, unknown
138.8
2218
Male, age 76, both hemispheres
120.3
1915
Female, age 42, unknown
120.1
2410
Female, age 72, unknown
115.3
2021
Male, age 53, unknown
109.9
2223
Female, age 72, unknown
106.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 33.0
Samples: 139
Max nTPM: 74.1
Min nTPM: 9.0
Std nTPM: 14.3
Median nTPM: 30.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
74.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
70.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
68.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
67.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
63.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
63.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
59.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
59.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
59.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
59.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
58.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
57.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
53.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
53.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
53.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
52.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
52.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
51.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
50.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
49.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
48.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
48.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
47.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
47.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
47.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
46.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
46.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
45.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
44.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
44.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
42.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
42.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
41.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
41.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
41.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
41.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
41.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
40.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
40.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
40.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
40.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
39.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
39.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
39.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
38.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
38.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
37.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
36.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
36.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
36.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
36.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
35.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
34.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
34.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
34.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
34.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
34.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
34.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
34.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
34.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
32.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
32.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
31.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
31.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
31.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
31.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
30.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
30.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
30.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
29.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
29.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
28.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
27.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
27.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
27.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
27.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
27.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
26.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
26.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
25.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
25.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
25.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
25.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
24.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
24.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
24.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
24.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
23.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
23.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
23.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
23.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
22.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
22.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
22.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
21.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
21.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
21.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
21.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
21.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
21.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
20.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
20.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
20.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
19.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
19.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
19.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
19.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
18.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
18.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
18.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
17.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
17.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
17.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
17.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
16.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
16.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
16.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
16.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
16.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
16.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
15.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
15.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
15.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
15.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
14.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
9.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 68.0
Samples: 4
Max nTPM: 71.4
Min nTPM: 63.6
Sample A
Male
71.4
Sample B
Male
63.6
Sample C
Female
69.5
Sample D
Female
67.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.