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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MPC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
320.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
287.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
287.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
263.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
262.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
262.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
261.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
251.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
248.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
245.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
236.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
231.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
230.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
227.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
226.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
226.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
220.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
219.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
218.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
216.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
215.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
212.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
212.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
212.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
210.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
205.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
201.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
201.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
199.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
198.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
193.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
191.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
188.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
188.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
186.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
183.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
182.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
176.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
175.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
169.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
169.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
168.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
168.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
164.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
164.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
161.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
161.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
157.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
154.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
154.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
152.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
152.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
151.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
150.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
149.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
147.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
139.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
139.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
139.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
139.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
139.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
136.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
135.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
134.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
133.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
132.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
132.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
131.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
131.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
131.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
128.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
127.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
125.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
125.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
125.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
123.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
121.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
121.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
121.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
119.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
118.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
118.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
117.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
116.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
115.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
114.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
113.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
113.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
113.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
113.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
112.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
110.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
109.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
108.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
108.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
108.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
107.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
107.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
106.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
106.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
106.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
105.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
105.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
105.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
104.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
104.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
104.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
103.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
101.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
101.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
101.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
100.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
100.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
100.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
100.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
99.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
99.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
99.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
97.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
97.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
97.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
96.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
96.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
95.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
95.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
95.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
94.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
94.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
94.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
94.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
94.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
92.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
91.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
91.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
90.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
89.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
88.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
88.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
87.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
87.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
86.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
86.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
86.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
85.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
85.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
85.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
85.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
85.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
85.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
84.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
83.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
83.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
83.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
82.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
82.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
82.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
82.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
81.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
81.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
81.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
81.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
81.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
80.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
80.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
80.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
79.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
79.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
78.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
78.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
78.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
77.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
77.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
76.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
76.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
76.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
76.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
76.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
76.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
76.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
75.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
75.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
75.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
75.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
75.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
75.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
74.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
74.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
73.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
73.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
73.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
73.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
72.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
72.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
72.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
71.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
71.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
71.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
70.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
70.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
70.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
69.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
69.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
68.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
68.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
67.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
67.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
66.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
66.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
65.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
65.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
65.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
64.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
63.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
63.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
63.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
63.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
63.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
62.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
61.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
60.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
60.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
60.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
59.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
58.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
58.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
58.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
57.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
55.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
54.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
54.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
54.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
53.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
53.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
52.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
52.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
52.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
52.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
51.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
51.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
50.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
50.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
50.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
49.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
48.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
47.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
47.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
44.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
42.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
42.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
40.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
39.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
39.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
38.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
38.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
27.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.3
721
Tumor
1.1
452
Normal
1.0
636
Normal
1.0
627
Tumor
1.0
746
Normal
0.9
616
Normal
0.9
742
Normal
0.9
443
Tumor
0.9
558
Normal
0.9
925
Tumor
0.8
227
Tumor
0.8
1022
Normal
0.8
124
Normal
0.7
738
Normal
0.7
572
Normal
0.7
221
Tumor
0.7
112
Tumor
0.7
414
Normal
0.7
128
Normal
0.7
286
Normal
0.7
568
Normal
0.7
462
Normal
0.7
818
Normal
0.7
426
Normal
0.7
873
Tumor
0.7
723
Tumor
0.7
1028
Normal
0.7
786
Normal
0.7
563
Tumor
0.6
648
Normal
0.6
564
Normal
0.6
232
Normal
0.6
912
Normal
0.6
312
Normal
0.6
862
Normal
0.6
298
Normal
0.6
376
Normal
0.6
984
Normal
0.6
436
Normal
0.6
824
Normal
0.6
344
Normal
0.6
686
Normal
0.6
618
Normal
0.6
162
Normal
0.6
816
Normal
0.5
111
Normal
0.5
878
Normal
0.5
114
Normal
0.5
1015
Tumor
0.5
1046
Normal
0.5
515
Tumor
0.5
778
Normal
0.5
883
Tumor
0.5
424
Normal
0.5
421
Tumor
0.5
342
Normal
0.5
914
Normal
0.5
866
Normal
0.5
218
Normal
0.5
744
Normal
0.5
352
Normal
0.5
142
Normal
0.5
628
Normal
0.5
571
Tumor
0.5
258
Normal
0.5
354
Normal
0.5
864
Normal
0.5
574
Normal
0.5
358
Normal
0.5
172
Normal
0.5
698
Normal
0.5
477
Tumor
0.5
148
Normal
0.5
422
Normal
0.5
1026
Normal
0.5
145
Tumor
0.5
186
Normal
0.4
271
Tumor
0.4
272
Normal
0.4
136
Normal
0.4
642
Normal
0.4
722
Normal
0.4
664
Normal
0.4
743
Tumor
0.4
1016
Normal
0.4
196
Normal
0.4
884
Normal
0.4
278
Normal
0.4
392
Normal
0.4
716
Normal
0.4
487
Tumor
0.4
214
Normal
0.4
446
Normal
0.4
466
Normal
0.4
464
Normal
0.4
1045
Tumor
0.4
314
Normal
0.4
327
Tumor
0.4
328
Normal
0.4
468
Normal
0.4
356
Normal
0.4
353
Tumor
0.4
432
Normal
0.4
388
Normal
0.4
262
Normal
0.4
384
Normal
0.4
228
Normal
0.4
222
Normal
0.4
728
Normal
0.3
714
Normal
0.3
851
Tumor
0.3
1044
Normal
0.3
428
Normal
0.3
187
Tumor
0.3
528
Normal
0.3
284
Normal
0.3
416
Normal
0.3
1032
Normal
0.3
456
Normal
0.3
882
Normal
0.3
364
Normal
0.3
874
Normal
0.3
756
Normal
0.3
755
Tumor
0.3
968
Normal
0.3
1043
Tumor
0.3
696
Normal
0.3
867
Tumor
0.3
268
Normal
0.3
394
Normal
0.3
662
Normal
0.3
852
Normal
0.3
361
Tumor
0.3
132
Normal
0.3
332
Normal
0.3
113
Tumor
0.3
713
Tumor
0.3
482
Normal
0.2
982
Normal
0.2
412
Normal
0.2
368
Normal
0.2
868
Normal
0.2
858
Normal
0.2
126
Normal
0.2
617
Tumor
0.2
223
Tumor
0.2
952
Normal
0.2
924
Normal
0.2
978
Normal
0.2
411
Tumor
0.2
434
Normal
0.2
341
Tumor
0.2
672
Normal
0.1
474
Normal
0.1
666
Normal
0.1
224
Normal
0.1
138
Normal
0.1
1027
Tumor
0.1
448
Normal
0.1
635
Tumor
0.1
526
Normal
0.1
146
Normal
0.1
188
Normal
0.1
1021
Tumor
0.1
695
Tumor
0.1
1025
Tumor
0.1
1014
Normal
0.1
444
Normal
0.0
386
Normal
0.0
396
Normal
0.0
863
Tumor
0.0
431
Tumor
0.0
815
Tumor
0.0
362
Normal
0.0
435
Tumor
0.0
212
Normal
0.0
918
Normal
0.0
393
Tumor
0.0
445
Tumor
0.0
494
Normal
0.0
191
Tumor
0.0
433
Tumor
0.0
567
Tumor
0.0
413
Tumor
0.0
137
Tumor
-0.1
484
Normal
-0.1
383
Tumor
-0.1
785
Tumor
-0.1
366
Normal
-0.1
472
Normal
-0.1
297
Tumor
-0.1
141
Tumor
-0.1
423
Tumor
-0.1
1042
Normal
-0.1
285
Tumor
-0.1
518
Normal
-0.1
955
Tumor
-0.1
357
Tumor
-0.1
922
Normal
-0.1
217
Tumor
-0.1
514
Normal
-0.1
478
Normal
-0.1
777
Tumor
-0.2
938
Normal
-0.2
956
Normal
-0.2
944
Normal
-0.2
192
Normal
-0.2
916
Normal
-0.2
395
Tumor
-0.2
976
Normal
-0.2
923
Tumor
-0.2
954
Normal
-0.2
823
Tumor
-0.2
937
Tumor
-0.2
966
Normal
-0.2
461
Tumor
-0.2
926
Normal
-0.2
641
Tumor
-0.2
447
Tumor
-0.2
1031
Tumor
-0.2
185
Tumor
-0.3
615
Tumor
-0.3
267
Tumor
-0.3
365
Tumor
-0.3
363
Tumor
-0.3
488
Normal
-0.3
534
Normal
-0.3
131
Tumor
-0.3
981
Tumor
-0.3
451
Tumor
-0.3
387
Tumor
-0.3
127
Tumor
-0.3
975
Tumor
-0.3
135
Tumor
-0.3
737
Tumor
-0.3
913
Tumor
-0.3
498
Normal
-0.3
663
Tumor
-0.4
277
Tumor
-0.4
195
Tumor
-0.4
455
Tumor
-0.4
147
Tumor
-0.4
921
Tumor
-0.4
391
Tumor
-0.4
857
Tumor
-0.4
647
Tumor
-0.4
481
Tumor
-0.4
967
Tumor
-0.4
964
Normal
-0.4
861
Tumor
-0.4
983
Tumor
-0.5
546
Normal
-0.5
557
Tumor
-0.5
881
Tumor
-0.5
343
Tumor
-0.5
958
Normal
-0.5
465
Tumor
-0.5
817
Tumor
-0.5
573
Tumor
-0.5
1041
Tumor
-0.5
213
Tumor
-0.6
367
Tumor
-0.6
425
Tumor
-0.6
516
Normal
-0.6
814
Normal
-0.6
463
Tumor
-0.6
727
Tumor
-0.6
523
Tumor
-0.6
741
Tumor
-0.6
261
Tumor
-0.6
813
Tumor
-0.6
415
Tumor
-0.6
911
Tumor
-0.7
915
Tumor
-0.7
125
Tumor
-0.7
492
Normal
-0.7
331
Tumor
-0.7
524
Normal
-0.7
231
Tumor
-0.7
471
Tumor
-0.7
313
Tumor
-0.7
161
Tumor
-0.7
257
Tumor
-0.8
977
Tumor
-0.8
527
Tumor
-0.8
467
Tumor
-0.9
685
Tumor
-0.9
355
Tumor
-0.9
427
Tumor
-0.9
538
Normal
-0.9
517
Tumor
-0.9
483
Tumor
-1.0
917
Tumor
-1.0
963
Tumor
-1.0
865
Tumor
-1.0
665
Tumor
-1.0
491
Tumor
-1.0
554
Normal
-1.0
171
Tumor
-1.1
724
Normal
-1.1
473
Tumor
-1.1
715
Tumor
-1.1
513
Tumor
-1.1
877
Tumor
-1.1
497
Tumor
-1.1
525
Tumor
-1.1
311
Tumor
-1.1
951
Tumor
-1.2
943
Tumor
-1.2
697
Tumor
-1.3
283
Tumor
-1.3
493
Tumor
-1.3
953
Tumor
-1.3
385
Tumor
-1.3
957
Tumor
-1.3
1013
Tumor
-1.4
536
Normal
-1.4
123
Tumor
-1.4
965
Tumor
-1.4
351
Tumor
-1.4
211
Tumor
-1.5
375
Tumor
-1.5
661
Tumor
-1.5
671
Tumor
-1.5
537
Tumor
-1.6
553
Tumor
-1.7
535
Tumor
-1.8
533
Tumor
-2.2
545
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.