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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP40 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
35.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNRNP40 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.8
965
Tumor
0.8
865
Tumor
0.7
131
Tumor
0.7
1031
Tumor
0.6
355
Tumor
0.6
951
Tumor
0.6
367
Tumor
0.6
431
Tumor
0.5
123
Tumor
0.5
331
Tumor
0.5
1021
Tumor
0.5
545
Tumor
0.5
967
Tumor
0.5
983
Tumor
0.5
285
Tumor
0.5
817
Tumor
0.5
497
Tumor
0.5
977
Tumor
0.5
271
Tumor
0.5
695
Tumor
0.4
351
Tumor
0.4
411
Tumor
0.4
313
Tumor
0.4
425
Tumor
0.4
443
Tumor
0.4
975
Tumor
0.4
877
Tumor
0.4
473
Tumor
0.4
647
Tumor
0.4
221
Tumor
0.4
277
Tumor
0.4
571
Tumor
0.4
533
Tumor
0.4
341
Tumor
0.4
413
Tumor
0.4
385
Tumor
0.4
727
Tumor
0.4
1013
Tumor
0.3
487
Tumor
0.3
517
Tumor
0.3
815
Tumor
0.3
227
Tumor
0.3
535
Tumor
0.3
737
Tumor
0.3
537
Tumor
0.3
777
Tumor
0.3
141
Tumor
0.3
813
Tumor
0.3
883
Tumor
0.3
881
Tumor
0.3
433
Tumor
0.3
515
Tumor
0.3
211
Tumor
0.3
937
Tumor
0.3
663
Tumor
0.2
573
Tumor
0.2
661
Tumor
0.2
297
Tumor
0.2
357
Tumor
0.2
365
Tumor
0.2
463
Tumor
0.2
447
Tumor
0.2
161
Tumor
0.2
523
Tumor
0.2
527
Tumor
0.2
283
Tumor
0.2
553
Tumor
0.2
455
Tumor
0.2
125
Tumor
0.2
461
Tumor
0.2
435
Tumor
0.2
112
Tumor
0.2
391
Tumor
0.2
465
Tumor
0.2
471
Tumor
0.2
113
Tumor
0.2
363
Tumor
0.2
785
Tumor
0.2
563
Tumor
0.2
943
Tumor
0.2
467
Tumor
0.2
375
Tumor
0.2
671
Tumor
0.2
957
Tumor
0.2
741
Tumor
0.2
513
Tumor
0.2
1043
Tumor
0.2
483
Tumor
0.2
395
Tumor
0.2
491
Tumor
0.1
925
Tumor
0.1
427
Tumor
0.1
715
Tumor
0.1
261
Tumor
0.1
921
Tumor
0.1
755
Tumor
0.1
923
Tumor
0.1
477
Tumor
0.1
635
Tumor
0.1
567
Tumor
0.1
383
Tumor
0.1
185
Tumor
0.1
714
Normal
0.1
814
Normal
0.1
963
Tumor
0.1
423
Tumor
0.1
478
Normal
0.1
445
Tumor
0.1
1045
Tumor
0.1
444
Normal
0.1
572
Normal
0.1
713
Tumor
0.1
953
Tumor
0.1
387
Tumor
0.1
724
Normal
0.1
137
Tumor
0.1
721
Tumor
0.1
195
Tumor
0.1
223
Tumor
0.1
641
Tumor
0.1
267
Tumor
0.0
911
Tumor
0.0
557
Tumor
0.0
171
Tumor
0.0
861
Tumor
0.0
981
Tumor
0.0
574
Normal
0.0
867
Tumor
0.0
1015
Tumor
0.0
912
Normal
0.0
697
Tumor
0.0
415
Tumor
0.0
482
Normal
0.0
913
Tumor
0.0
665
Tumor
0.0
1025
Tumor
0.0
685
Tumor
0.0
472
Normal
0.0
124
Normal
0.0
135
Tumor
0.0
873
Tumor
0.0
493
Tumor
0.0
568
Normal
0.0
311
Tumor
0.0
662
Normal
0.0
147
Tumor
0.0
558
Normal
0.0
686
Normal
0.0
696
Normal
0.0
481
Tumor
0.0
564
Normal
0.0
393
Tumor
0.0
955
Tumor
0.0
191
Tumor
0.0
217
Tumor
0.0
361
Tumor
0.0
434
Normal
0.0
186
Normal
0.0
498
Normal
0.0
851
Tumor
0.0
488
Normal
0.0
257
Tumor
0.0
128
Normal
0.0
343
Tumor
0.0
917
Tumor
0.0
915
Tumor
0.0
823
Tumor
0.0
368
Normal
0.0
148
Normal
0.0
484
Normal
-0.1
192
Normal
-0.1
615
Tumor
-0.1
666
Normal
-0.1
525
Tumor
-0.1
536
Normal
-0.1
213
Tumor
-0.1
1041
Tumor
-0.1
722
Normal
-0.1
384
Normal
-0.1
744
Normal
-0.1
312
Normal
-0.1
627
Tumor
-0.1
648
Normal
-0.1
554
Normal
-0.1
448
Normal
-0.1
396
Normal
-0.1
196
Normal
-0.1
492
Normal
-0.1
162
Normal
-0.1
421
Tumor
-0.1
462
Normal
-0.1
664
Normal
-0.1
172
Normal
-0.1
474
Normal
-0.1
778
Normal
-0.1
111
Normal
-0.1
428
Normal
-0.1
188
Normal
-0.1
327
Tumor
-0.1
745
Tumor
-0.1
534
Normal
-0.1
436
Normal
-0.1
538
Normal
-0.1
494
Normal
-0.1
142
Normal
-0.1
114
Normal
-0.1
546
Normal
-0.1
524
Normal
-0.1
187
Tumor
-0.1
362
Normal
-0.1
392
Normal
-0.1
672
Normal
-0.1
1027
Tumor
-0.1
127
Tumor
-0.1
617
Tumor
-0.2
268
Normal
-0.2
716
Normal
-0.2
364
Normal
-0.2
698
Normal
-0.2
146
Normal
-0.2
416
Normal
-0.2
914
Normal
-0.2
232
Normal
-0.2
728
Normal
-0.2
952
Normal
-0.2
328
Normal
-0.2
954
Normal
-0.2
353
Tumor
-0.2
366
Normal
-0.2
298
Normal
-0.2
126
Normal
-0.2
451
Tumor
-0.2
966
Normal
-0.2
342
Normal
-0.2
386
Normal
-0.2
926
Normal
-0.2
352
Normal
-0.2
394
Normal
-0.2
1046
Normal
-0.2
968
Normal
-0.2
376
Normal
-0.2
344
Normal
-0.2
138
Normal
-0.2
412
Normal
-0.2
723
Tumor
-0.2
878
Normal
-0.2
388
Normal
-0.2
516
Normal
-0.2
738
Normal
-0.2
742
Normal
-0.2
526
Normal
-0.2
746
Normal
-0.2
422
Normal
-0.2
426
Normal
-0.2
874
Normal
-0.2
332
Normal
-0.2
1028
Normal
-0.2
222
Normal
-0.2
922
Normal
-0.2
262
Normal
-0.2
944
Normal
-0.2
924
Normal
-0.2
464
Normal
-0.2
466
Normal
-0.2
314
Normal
-0.2
858
Normal
-0.2
857
Tumor
-0.2
231
Tumor
-0.2
938
Normal
-0.2
982
Normal
-0.3
145
Tumor
-0.3
956
Normal
-0.3
358
Normal
-0.3
1014
Normal
-0.3
452
Normal
-0.3
866
Normal
-0.3
786
Normal
-0.3
272
Normal
-0.3
1016
Normal
-0.3
818
Normal
-0.3
136
Normal
-0.3
816
Normal
-0.3
1044
Normal
-0.3
984
Normal
-0.3
1032
Normal
-0.3
224
Normal
-0.3
212
Normal
-0.3
456
Normal
-0.3
916
Normal
-0.3
528
Normal
-0.3
518
Normal
-0.3
214
Normal
-0.3
228
Normal
-0.3
918
Normal
-0.3
884
Normal
-0.3
864
Normal
-0.3
446
Normal
-0.3
424
Normal
-0.3
976
Normal
-0.3
354
Normal
-0.3
432
Normal
-0.3
1026
Normal
-0.3
278
Normal
-0.3
756
Normal
-0.3
286
Normal
-0.3
218
Normal
-0.3
414
Normal
-0.3
958
Normal
-0.3
514
Normal
-0.3
132
Normal
-0.3
824
Normal
-0.3
284
Normal
-0.3
882
Normal
-0.3
468
Normal
-0.4
356
Normal
-0.4
1042
Normal
-0.4
964
Normal
-0.4
852
Normal
-0.4
863
Tumor
-0.4
868
Normal
-0.4
978
Normal
-0.4
258
Normal
-0.4
636
Normal
-0.5
862
Normal
-0.5
1022
Normal
-0.5
618
Normal
-0.5
642
Normal
-0.5
616
Normal
-0.6
628
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
