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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGFR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
99.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
97.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
93.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
92.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
92.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
91.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
87.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
87.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
82.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
78.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
77.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
76.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
74.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
73.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
73.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
72.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
72.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
71.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
65.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
65.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
65.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
64.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
64.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
63.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
62.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
61.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
60.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
59.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
59.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
58.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
57.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
56.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
56.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
56.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
55.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
55.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
54.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
54.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
53.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
53.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
53.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
53.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
53.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
52.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
51.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
51.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
50.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
49.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
49.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
48.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
48.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
48.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
47.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
47.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
47.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
46.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
46.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
46.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
46.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
46.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
43.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
42.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
42.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
42.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
41.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
40.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
40.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
39.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
39.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
38.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
38.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
38.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
37.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
36.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
36.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
35.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
35.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
35.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
35.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
34.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
33.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
33.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
33.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
29.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
21.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGFR is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.1
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
116.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
98.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
79.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
75.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
71.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
70.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
70.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
70.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
69.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
69.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
66.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
66.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
62.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
61.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
60.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
58.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
57.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
56.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
54.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
53.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
52.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
49.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
48.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
47.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
46.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
46.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
44.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
39.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
38.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
38.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
36.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
36.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
34.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
32.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
29.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
28.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
28.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1031
Tumor
0.9
937
Tumor
0.8
967
Tumor
0.8
443
Tumor
0.7
213
Tumor
0.7
217
Tumor
0.6
817
Tumor
0.6
883
Tumor
0.6
387
Tumor
0.6
975
Tumor
0.6
1015
Tumor
0.6
777
Tumor
0.6
435
Tumor
0.6
221
Tumor
0.6
483
Tumor
0.6
465
Tumor
0.5
497
Tumor
0.5
755
Tumor
0.5
785
Tumor
0.5
647
Tumor
0.5
123
Tumor
0.5
477
Tumor
0.4
724
Normal
0.4
145
Tumor
0.4
327
Tumor
0.4
391
Tumor
0.4
113
Tumor
0.4
365
Tumor
0.4
955
Tumor
0.4
433
Tumor
0.4
383
Tumor
0.3
471
Tumor
0.3
513
Tumor
0.3
1021
Tumor
0.3
445
Tumor
0.3
535
Tumor
0.3
1013
Tumor
0.3
925
Tumor
0.3
141
Tumor
0.3
112
Tumor
0.3
147
Tumor
0.3
951
Tumor
0.3
218
Normal
0.3
966
Normal
0.3
635
Tumor
0.3
563
Tumor
0.3
385
Tumor
0.3
171
Tumor
0.3
661
Tumor
0.3
341
Tumor
0.3
913
Tumor
0.3
963
Tumor
0.3
1045
Tumor
0.3
277
Tumor
0.3
367
Tumor
0.3
533
Tumor
0.3
865
Tumor
0.3
943
Tumor
0.2
411
Tumor
0.2
262
Normal
0.2
434
Normal
0.2
627
Tumor
0.2
873
Tumor
0.2
395
Tumor
0.2
953
Tumor
0.2
921
Tumor
0.2
331
Tumor
0.2
915
Tumor
0.2
423
Tumor
0.2
487
Tumor
0.2
413
Tumor
0.2
615
Tumor
0.2
211
Tumor
0.2
978
Normal
0.2
127
Tumor
0.2
881
Tumor
0.2
447
Tumor
0.2
557
Tumor
0.2
977
Tumor
0.2
311
Tumor
0.2
523
Tumor
0.2
451
Tumor
0.2
786
Normal
0.2
965
Tumor
0.2
271
Tumor
0.2
297
Tumor
0.2
357
Tumor
0.2
461
Tumor
0.2
191
Tumor
0.2
455
Tumor
0.2
666
Normal
0.2
313
Tumor
0.2
981
Tumor
0.1
196
Normal
0.1
416
Normal
0.1
648
Normal
0.1
185
Tumor
0.1
195
Tumor
0.1
272
Normal
0.1
267
Tumor
0.1
756
Normal
0.1
361
Tumor
0.1
745
Tumor
0.1
386
Normal
0.1
664
Normal
0.1
923
Tumor
0.1
851
Tumor
0.1
952
Normal
0.1
916
Normal
0.1
493
Tumor
0.1
721
Tumor
0.1
514
Normal
0.1
427
Tumor
0.1
914
Normal
0.1
545
Tumor
0.1
464
Normal
0.1
456
Normal
0.1
353
Tumor
0.1
351
Tumor
0.1
778
Normal
0.1
446
Normal
0.1
146
Normal
0.1
396
Normal
0.1
515
Tumor
0.1
492
Normal
0.1
136
Normal
0.1
861
Tumor
0.1
567
Tumor
0.1
857
Tumor
0.1
188
Normal
0.1
222
Normal
0.1
375
Tumor
0.1
571
Tumor
0.1
332
Normal
0.1
114
Normal
0.1
312
Normal
0.1
355
Tumor
0.1
425
Tumor
0.1
126
Normal
0.1
415
Tumor
0.1
723
Tumor
0.1
738
Normal
0.1
137
Tumor
0.1
444
Normal
0.1
823
Tumor
0.1
884
Normal
0.1
138
Normal
0.1
517
Tumor
0.1
482
Normal
0.1
484
Normal
0.1
617
Tumor
0.1
867
Tumor
0.1
392
Normal
0.1
467
Tumor
0.1
298
Normal
0.1
714
Normal
0.1
957
Tumor
0.1
958
Normal
0.1
111
Normal
0.1
956
Normal
0.1
468
Normal
0.1
436
Normal
0.0
452
Normal
0.0
362
Normal
0.0
524
Normal
0.0
283
Tumor
0.0
663
Tumor
0.0
376
Normal
0.0
498
Normal
0.0
537
Tumor
0.0
536
Normal
0.0
214
Normal
0.0
358
Normal
0.0
662
Normal
0.0
466
Normal
0.0
268
Normal
0.0
917
Tumor
0.0
877
Tumor
0.0
976
Normal
0.0
518
Normal
0.0
414
Normal
0.0
132
Normal
0.0
161
Tumor
0.0
538
Normal
0.0
314
Normal
0.0
223
Tumor
0.0
938
Normal
0.0
258
Normal
0.0
481
Tumor
0.0
285
Tumor
0.0
366
Normal
0.0
641
Tumor
0.0
968
Normal
0.0
814
Normal
0.0
488
Normal
0.0
261
Tumor
0.0
926
Normal
0.0
737
Tumor
0.0
525
Tumor
0.0
746
Normal
0.0
741
Tumor
0.0
1028
Normal
0.0
368
Normal
0.0
278
Normal
0.0
616
Normal
0.0
695
Tumor
0.0
554
Normal
0.0
286
Normal
0.0
528
Normal
0.0
665
Tumor
0.0
546
Normal
0.0
212
Normal
0.0
527
Tumor
0.0
344
Normal
0.0
424
Normal
0.0
421
Tumor
0.0
231
Tumor
0.0
534
Normal
0.0
526
Normal
0.0
815
Tumor
0.0
192
Normal
0.0
1014
Normal
0.0
671
Tumor
0.0
922
Normal
0.0
428
Normal
0.0
628
Normal
0.0
574
Normal
0.0
232
Normal
0.0
422
Normal
0.0
558
Normal
0.0
142
Normal
0.0
162
Normal
0.0
448
Normal
0.0
284
Normal
0.0
472
Normal
0.0
924
Normal
0.0
474
Normal
-0.1
568
Normal
-0.1
642
Normal
-0.1
696
Normal
-0.1
983
Tumor
-0.1
862
Normal
-0.1
1046
Normal
-0.1
412
Normal
-0.1
463
Tumor
-0.1
516
Normal
-0.1
328
Normal
-0.1
426
Normal
-0.1
722
Normal
-0.1
672
Normal
-0.1
224
Normal
-0.1
494
Normal
-0.1
462
Normal
-0.1
882
Normal
-0.1
918
Normal
-0.1
388
Normal
-0.1
874
Normal
-0.1
394
Normal
-0.1
553
Tumor
-0.1
187
Tumor
-0.1
135
Tumor
-0.1
384
Normal
-0.1
982
Normal
-0.1
124
Normal
-0.1
125
Tumor
-0.1
964
Normal
-0.1
954
Normal
-0.1
742
Normal
-0.1
868
Normal
-0.1
1032
Normal
-0.1
816
Normal
-0.1
716
Normal
-0.1
863
Tumor
-0.1
878
Normal
-0.1
186
Normal
-0.1
228
Normal
-0.1
564
Normal
-0.1
572
Normal
-0.1
1016
Normal
-0.1
257
Tumor
-0.1
864
Normal
-0.1
363
Tumor
-0.1
352
Normal
-0.1
984
Normal
-0.1
343
Tumor
-0.1
852
Normal
-0.1
618
Normal
-0.1
743
Tumor
-0.1
1022
Normal
-0.1
713
Tumor
-0.1
1026
Normal
-0.1
858
Normal
-0.1
128
Normal
-0.2
698
Normal
-0.2
356
Normal
-0.2
813
Tumor
-0.2
478
Normal
-0.2
686
Normal
-0.2
342
Normal
-0.2
148
Normal
-0.2
172
Normal
-0.2
911
Tumor
-0.2
866
Normal
-0.2
364
Normal
-0.2
1025
Tumor
-0.2
818
Normal
-0.2
473
Tumor
-0.2
824
Normal
-0.2
1044
Normal
-0.2
1042
Normal
-0.2
573
Tumor
-0.2
727
Tumor
-0.2
227
Tumor
-0.2
1043
Tumor
-0.2
912
Normal
-0.2
944
Normal
-0.3
491
Tumor
-0.3
1027
Tumor
-0.3
636
Normal
-0.3
431
Tumor
-0.3
393
Tumor
-0.3
728
Normal
-0.3
1041
Tumor
-0.3
697
Tumor
-0.3
744
Normal
-0.3
432
Normal
-0.3
354
Normal
-0.3
685
Tumor
-0.5
715
Tumor
-0.5
131
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
