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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJC25 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DNAJC25 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
32.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
32.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
636
Normal
0.8
298
Normal
0.8
981
Tumor
0.8
342
Normal
0.8
858
Normal
0.7
742
Normal
0.7
554
Normal
0.7
462
Normal
0.7
452
Normal
0.6
648
Normal
0.6
695
Tumor
0.6
824
Normal
0.6
686
Normal
0.6
128
Normal
0.6
1046
Normal
0.6
388
Normal
0.6
616
Normal
0.6
436
Normal
0.6
482
Normal
0.6
127
Tumor
0.6
938
Normal
0.6
568
Normal
0.6
1032
Normal
0.6
426
Normal
0.6
867
Tumor
0.6
332
Normal
0.5
868
Normal
0.5
358
Normal
0.5
572
Normal
0.5
286
Normal
0.5
172
Normal
0.5
484
Normal
0.5
354
Normal
0.5
222
Normal
0.5
741
Tumor
0.5
376
Normal
0.5
664
Normal
0.5
818
Normal
0.5
162
Normal
0.5
114
Normal
0.5
435
Tumor
0.5
196
Normal
0.5
1014
Normal
0.5
138
Normal
0.5
912
Normal
0.5
465
Tumor
0.5
756
Normal
0.5
716
Normal
0.5
186
Normal
0.4
526
Normal
0.4
698
Normal
0.4
564
Normal
0.4
366
Normal
0.4
746
Normal
0.4
723
Tumor
0.4
816
Normal
0.4
394
Normal
0.4
132
Normal
0.4
396
Normal
0.4
1044
Normal
0.4
574
Normal
0.4
314
Normal
0.4
148
Normal
0.4
258
Normal
0.4
714
Normal
0.4
944
Normal
0.4
278
Normal
0.4
1022
Normal
0.4
924
Normal
0.4
744
Normal
0.4
862
Normal
0.4
414
Normal
0.4
448
Normal
0.4
392
Normal
0.4
481
Tumor
0.4
111
Normal
0.4
984
Normal
0.4
446
Normal
0.4
214
Normal
0.4
662
Normal
0.4
864
Normal
0.4
356
Normal
0.4
642
Normal
0.4
432
Normal
0.4
964
Normal
0.4
228
Normal
0.4
365
Tumor
0.4
232
Normal
0.4
778
Normal
0.4
628
Normal
0.4
918
Normal
0.4
722
Normal
0.4
738
Normal
0.4
423
Tumor
0.4
672
Normal
0.4
955
Tumor
0.3
1026
Normal
0.3
558
Normal
0.3
142
Normal
0.3
958
Normal
0.3
914
Normal
0.3
922
Normal
0.3
422
Normal
0.3
954
Normal
0.3
618
Normal
0.3
472
Normal
0.3
212
Normal
0.3
926
Normal
0.3
976
Normal
0.3
982
Normal
0.3
518
Normal
0.3
262
Normal
0.3
353
Tumor
0.3
424
Normal
0.3
857
Tumor
0.3
1042
Normal
0.3
786
Normal
0.3
546
Normal
0.3
615
Tumor
0.3
852
Normal
0.3
534
Normal
0.3
1016
Normal
0.3
428
Normal
0.3
464
Normal
0.3
312
Normal
0.3
956
Normal
0.3
571
Tumor
0.3
136
Normal
0.3
412
Normal
0.3
952
Normal
0.2
488
Normal
0.2
882
Normal
0.2
785
Tumor
0.2
696
Normal
0.2
978
Normal
0.2
272
Normal
0.2
494
Normal
0.2
915
Tumor
0.2
866
Normal
0.2
466
Normal
0.2
516
Normal
0.2
146
Normal
0.2
666
Normal
0.2
474
Normal
0.2
362
Normal
0.2
878
Normal
0.2
514
Normal
0.2
911
Tumor
0.2
777
Tumor
0.2
1028
Normal
0.2
284
Normal
0.2
728
Normal
0.2
126
Normal
0.2
884
Normal
0.2
364
Normal
0.2
434
Normal
0.2
344
Normal
0.2
124
Normal
0.2
368
Normal
0.2
528
Normal
0.1
966
Normal
0.1
456
Normal
0.1
218
Normal
0.1
224
Normal
0.1
416
Normal
0.1
328
Normal
0.1
352
Normal
0.1
863
Tumor
0.1
468
Normal
0.1
968
Normal
0.1
913
Tumor
0.1
384
Normal
0.1
386
Normal
0.0
188
Normal
0.0
1043
Tumor
0.0
1015
Tumor
0.0
492
Normal
0.0
721
Tumor
0.0
755
Tumor
0.0
538
Normal
0.0
524
Normal
0.0
445
Tumor
0.0
861
Tumor
0.0
647
Tumor
0.0
874
Normal
0.0
261
Tumor
-0.1
341
Tumor
-0.1
627
Tumor
-0.1
745
Tumor
-0.1
498
Normal
-0.1
444
Normal
-0.1
515
Tumor
-0.1
567
Tumor
-0.1
113
Tumor
-0.1
145
Tumor
-0.1
112
Tumor
-0.1
536
Normal
-0.1
916
Normal
-0.1
267
Tumor
-0.1
327
Tumor
-0.1
431
Tumor
-0.1
487
Tumor
-0.1
1045
Tumor
-0.2
967
Tumor
-0.2
553
Tumor
-0.2
478
Normal
-0.2
268
Normal
-0.2
192
Normal
-0.2
411
Tumor
-0.2
851
Tumor
-0.2
147
Tumor
-0.2
415
Tumor
-0.2
513
Tumor
-0.3
461
Tumor
-0.3
393
Tumor
-0.3
823
Tumor
-0.3
815
Tumor
-0.3
724
Normal
-0.3
977
Tumor
-0.3
277
Tumor
-0.3
617
Tumor
-0.3
1041
Tumor
-0.3
963
Tumor
-0.3
217
Tumor
-0.3
873
Tumor
-0.3
713
Tumor
-0.4
937
Tumor
-0.4
697
Tumor
-0.4
557
Tumor
-0.4
665
Tumor
-0.4
635
Tumor
-0.4
357
Tumor
-0.4
663
Tumor
-0.4
451
Tumor
-0.4
483
Tumor
-0.4
433
Tumor
-0.4
141
Tumor
-0.4
921
Tumor
-0.4
573
Tumor
-0.4
421
Tumor
-0.4
187
Tumor
-0.4
923
Tumor
-0.5
227
Tumor
-0.5
491
Tumor
-0.5
195
Tumor
-0.5
161
Tumor
-0.5
271
Tumor
-0.5
285
Tumor
-0.5
737
Tumor
-0.5
447
Tumor
-0.5
191
Tumor
-0.5
137
Tumor
-0.5
497
Tumor
-0.5
1025
Tumor
-0.5
523
Tumor
-0.5
943
Tumor
-0.5
463
Tumor
-0.5
1013
Tumor
-0.5
361
Tumor
-0.6
813
Tumor
-0.6
727
Tumor
-0.6
533
Tumor
-0.6
427
Tumor
-0.6
983
Tumor
-0.6
391
Tumor
-0.6
525
Tumor
-0.6
355
Tumor
-0.6
125
Tumor
-0.6
563
Tumor
-0.6
865
Tumor
-0.6
477
Tumor
-0.6
814
Normal
-0.6
917
Tumor
-0.6
641
Tumor
-0.6
473
Tumor
-0.6
123
Tumor
-0.7
1031
Tumor
-0.7
1027
Tumor
-0.7
493
Tumor
-0.7
975
Tumor
-0.7
413
Tumor
-0.7
517
Tumor
-0.7
171
Tumor
-0.7
881
Tumor
-0.7
443
Tumor
-0.7
953
Tumor
-0.7
223
Tumor
-0.7
883
Tumor
-0.7
471
Tumor
-0.7
425
Tumor
-0.7
375
Tumor
-0.7
527
Tumor
-0.8
537
Tumor
-0.8
545
Tumor
-0.8
231
Tumor
-0.8
221
Tumor
-0.8
257
Tumor
-0.8
965
Tumor
-0.8
383
Tumor
-0.9
363
Tumor
-0.9
715
Tumor
-0.9
661
Tumor
-0.9
135
Tumor
-0.9
467
Tumor
-0.9
671
Tumor
-0.9
385
Tumor
-0.9
185
Tumor
-0.9
685
Tumor
-1.0
387
Tumor
-1.0
213
Tumor
-1.0
877
Tumor
-1.0
743
Tumor
-1.0
131
Tumor
-1.0
817
Tumor
-1.1
367
Tumor
-1.1
535
Tumor
-1.1
331
Tumor
-1.1
455
Tumor
-1.1
297
Tumor
-1.1
925
Tumor
-1.1
957
Tumor
-1.1
1021
Tumor
-1.1
343
Tumor
-1.1
313
Tumor
-1.2
283
Tumor
-1.2
395
Tumor
-1.2
211
Tumor
-1.2
351
Tumor
-1.3
951
Tumor
-1.4
311
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
