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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TARBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TARBP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
45.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
553
Tumor
1.9
951
Tumor
1.8
231
Tumor
1.7
171
Tumor
1.6
975
Tumor
1.4
221
Tumor
1.3
271
Tumor
1.2
343
Tumor
1.1
881
Tumor
1.1
425
Tumor
1.1
527
Tumor
1.1
921
Tumor
1.1
685
Tumor
1.0
743
Tumor
1.0
147
Tumor
1.0
641
Tumor
1.0
863
Tumor
1.0
573
Tumor
0.9
277
Tumor
0.9
977
Tumor
0.9
445
Tumor
0.9
697
Tumor
0.9
715
Tumor
0.8
1021
Tumor
0.8
471
Tumor
0.8
351
Tumor
0.8
817
Tumor
0.8
313
Tumor
0.8
635
Tumor
0.8
483
Tumor
0.7
257
Tumor
0.7
911
Tumor
0.7
777
Tumor
0.7
741
Tumor
0.7
283
Tumor
0.7
867
Tumor
0.6
823
Tumor
0.6
393
Tumor
0.6
357
Tumor
0.6
724
Normal
0.6
443
Tumor
0.6
917
Tumor
0.6
671
Tumor
0.5
385
Tumor
0.5
125
Tumor
0.5
661
Tumor
0.5
213
Tumor
0.5
877
Tumor
0.5
123
Tumor
0.5
915
Tumor
0.5
395
Tumor
0.5
967
Tumor
0.5
1043
Tumor
0.5
361
Tumor
0.4
131
Tumor
0.4
427
Tumor
0.4
523
Tumor
0.4
1013
Tumor
0.4
421
Tumor
0.4
493
Tumor
0.4
665
Tumor
0.4
127
Tumor
0.4
1031
Tumor
0.4
477
Tumor
0.4
191
Tumor
0.4
563
Tumor
0.4
1027
Tumor
0.4
411
Tumor
0.3
331
Tumor
0.3
187
Tumor
0.3
433
Tumor
0.3
515
Tumor
0.3
497
Tumor
0.3
455
Tumor
0.3
545
Tumor
0.3
925
Tumor
0.3
227
Tumor
0.3
533
Tumor
0.3
647
Tumor
0.3
141
Tumor
0.3
737
Tumor
0.2
297
Tumor
0.2
1041
Tumor
0.2
391
Tumor
0.2
473
Tumor
0.2
1025
Tumor
0.2
517
Tumor
0.2
883
Tumor
0.2
463
Tumor
0.2
387
Tumor
0.2
727
Tumor
0.2
943
Tumor
0.1
375
Tumor
0.1
957
Tumor
0.1
537
Tumor
0.1
461
Tumor
0.1
755
Tumor
0.1
431
Tumor
0.1
861
Tumor
0.1
311
Tumor
0.1
567
Tumor
0.1
211
Tumor
0.1
865
Tumor
0.1
185
Tumor
0.1
195
Tumor
0.1
1015
Tumor
0.0
487
Tumor
0.0
413
Tumor
0.0
557
Tumor
0.0
428
Normal
0.0
981
Tumor
0.0
112
Tumor
0.0
353
Tumor
0.0
965
Tumor
0.0
666
Normal
0.0
126
Normal
0.0
367
Tumor
0.0
384
Normal
-0.1
232
Normal
-0.1
785
Tumor
-0.1
267
Tumor
-0.1
386
Normal
-0.1
525
Tumor
-0.1
953
Tumor
-0.1
314
Normal
-0.1
358
Normal
-0.1
137
Tumor
-0.1
354
Normal
-0.1
388
Normal
-0.1
394
Normal
-0.1
721
Tumor
-0.1
312
Normal
-0.1
414
Normal
-0.1
268
Normal
-0.1
222
Normal
-0.2
272
Normal
-0.2
355
Tumor
-0.2
813
Tumor
-0.2
976
Normal
-0.2
392
Normal
-0.2
383
Tumor
-0.2
963
Tumor
-0.2
362
Normal
-0.2
278
Normal
-0.2
217
Tumor
-0.2
366
Normal
-0.2
913
Tumor
-0.2
258
Normal
-0.2
368
Normal
-0.2
662
Normal
-0.2
352
Normal
-0.2
983
Tumor
-0.2
615
Tumor
-0.2
262
Normal
-0.2
396
Normal
-0.2
451
Tumor
-0.2
332
Normal
-0.2
447
Tumor
-0.2
574
Normal
-0.2
114
Normal
-0.2
192
Normal
-0.2
857
Tumor
-0.2
172
Normal
-0.2
432
Normal
-0.2
914
Normal
-0.2
218
Normal
-0.2
923
Tumor
-0.3
128
Normal
-0.3
363
Tumor
-0.3
434
Normal
-0.3
327
Tumor
-0.3
481
Tumor
-0.3
491
Tumor
-0.3
492
Normal
-0.3
365
Tumor
-0.3
285
Tumor
-0.3
982
Normal
-0.3
1042
Normal
-0.3
528
Normal
-0.3
672
Normal
-0.3
214
Normal
-0.3
188
Normal
-0.3
534
Normal
-0.3
376
Normal
-0.3
498
Normal
-0.3
261
Tumor
-0.3
536
Normal
-0.3
113
Tumor
-0.3
111
Normal
-0.3
526
Normal
-0.3
444
Normal
-0.3
196
Normal
-0.3
978
Normal
-0.3
814
Normal
-0.3
422
Normal
-0.3
513
Tumor
-0.3
648
Normal
-0.3
627
Tumor
-0.3
546
Normal
-0.3
494
Normal
-0.3
1016
Normal
-0.3
478
Normal
-0.3
286
Normal
-0.3
554
Normal
-0.3
571
Tumor
-0.3
874
Normal
-0.3
341
Tumor
-0.3
446
Normal
-0.3
342
Normal
-0.3
124
Normal
-0.3
145
Tumor
-0.4
148
Normal
-0.4
1046
Normal
-0.4
224
Normal
-0.4
298
Normal
-0.4
474
Normal
-0.4
714
Normal
-0.4
466
Normal
-0.4
488
Normal
-0.4
138
Normal
-0.4
344
Normal
-0.4
465
Tumor
-0.4
564
Normal
-0.4
423
Tumor
-0.4
284
Normal
-0.4
723
Tumor
-0.4
426
Normal
-0.4
1022
Normal
-0.4
424
Normal
-0.4
435
Tumor
-0.4
456
Normal
-0.4
868
Normal
-0.4
864
Normal
-0.4
664
Normal
-0.4
958
Normal
-0.4
745
Tumor
-0.4
535
Tumor
-0.4
162
Normal
-0.4
416
Normal
-0.4
698
Normal
-0.4
472
Normal
-0.4
642
Normal
-0.4
912
Normal
-0.4
436
Normal
-0.4
186
Normal
-0.4
722
Normal
-0.5
538
Normal
-0.5
696
Normal
-0.5
1028
Normal
-0.5
916
Normal
-0.5
884
Normal
-0.5
728
Normal
-0.5
964
Normal
-0.5
1014
Normal
-0.5
228
Normal
-0.5
482
Normal
-0.5
882
Normal
-0.5
484
Normal
-0.5
462
Normal
-0.5
132
Normal
-0.5
136
Normal
-0.5
467
Tumor
-0.5
616
Normal
-0.5
514
Normal
-0.5
356
Normal
-0.5
956
Normal
-0.5
862
Normal
-0.5
468
Normal
-0.5
568
Normal
-0.5
852
Normal
-0.5
984
Normal
-0.5
954
Normal
-0.5
968
Normal
-0.5
328
Normal
-0.5
524
Normal
-0.5
873
Tumor
-0.5
738
Normal
-0.5
716
Normal
-0.5
223
Tumor
-0.6
516
Normal
-0.6
415
Tumor
-0.6
212
Normal
-0.6
944
Normal
-0.6
518
Normal
-0.6
464
Normal
-0.6
818
Normal
-0.6
1026
Normal
-0.6
815
Tumor
-0.6
558
Normal
-0.6
952
Normal
-0.6
628
Normal
-0.6
618
Normal
-0.6
452
Normal
-0.6
364
Normal
-0.6
742
Normal
-0.6
686
Normal
-0.6
786
Normal
-0.6
572
Normal
-0.6
1032
Normal
-0.6
918
Normal
-0.6
713
Tumor
-0.6
955
Tumor
-0.6
146
Normal
-0.6
617
Tumor
-0.6
412
Normal
-0.6
922
Normal
-0.6
1045
Tumor
-0.6
636
Normal
-0.6
448
Normal
-0.6
816
Normal
-0.6
966
Normal
-0.7
878
Normal
-0.7
858
Normal
-0.7
142
Normal
-0.7
866
Normal
-0.7
778
Normal
-0.7
756
Normal
-0.7
1044
Normal
-0.7
161
Tumor
-0.7
746
Normal
-0.7
926
Normal
-0.7
851
Tumor
-0.8
744
Normal
-0.8
824
Normal
-0.8
695
Tumor
-0.8
938
Normal
-0.9
937
Tumor
-0.9
924
Normal
-1.0
135
Tumor
-1.0
663
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
