MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.5 nTPM
HPA Brain:33.9 nTPM
GTEx:3.5 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:9.3 nTPM
Mouse:22.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
2586 Male, age 75, left hemisphere 53.9
2219 Male, age 76, both hemispheres 40.7
2666 Male, age 74, left hemisphere 35.0
2828 Female, age 72, unknown 33.2
1827 Male, age 72, unknown 32.0
1833 Male, age 53, unknown 29.7
2411 Female, age 72, unknown 28.7
1830 Male, age 51, unknown 27.7
2019 Male, age 18, unknown 25.5
1870 Female, age 42, unknown 24.5
Dorsal raphe nucleus
nTPM: 26.6
2047 Male, age 72, unknown 30.7
1828 Male, age 53, unknown 28.0
2750 Male, age 76, both hemispheres 27.2
2298 Female, age 72, unknown 25.2
2016 Female, age 72, unknown 22.1
Inferior colliculus
nTPM: 25.4
2849 Male, age 72, unknown 30.5
1848 Female, age 42, unknown 27.6
1890 Male, age 53, unknown 22.6
2097 Female, age 72, unknown 20.9
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 32.7
1795 Male, age 51, unknown 35.5
2502 Female, age 75, unknown 32.5
1947 Male, age 18, unknown 30.1
Periaquaductal grey, dorsal
nTPM: 26.9
1840 Male, age 53, unknown 31.1
2464 Female, age 72, unknown 26.3
1831 Male, age 72, unknown 26.2
2850 Male, age 76, both hemispheres 24.1
Periaquaductal grey, lateral
nTPM: 27.3
2272 Male, age 74, both hemispheres 29.3
2140 Male, age 76, both hemispheres 27.6
2053 Male, age 18, unknown 24.9
Pretectal area
nTPM: 31.5
1944 Female, age 72, unknown 38.0
1816 Male, age 51, unknown 35.0
1817 Female, age 42, unknown 34.0
2667 Female, age 75, unknown 33.3
2007 Male, age 72, unknown 33.0
2407 Male, age 75, both hemispheres 32.5
2825 Male, age 18, unknown 31.0
2224 Female, age 72, unknown 29.6
1815 Male, age 53, unknown 29.1
2316 Male, age 76, right hemisphere 26.1
2273 Male, age 74, both hemispheres 25.4
Red nucleus
nTPM: 25.6
2584 Male, age 75, left hemisphere 34.1
2725 Female, age 75, unknown 33.3
2785 Male, age 18, unknown 29.1
2823 Male, age 76, right hemisphere 28.4
2769 Male, age 72, unknown 25.3
2588 Male, age 74, left hemisphere 25.2
2227 Male, age 72, unknown 25.1
1865 Male, age 51, unknown 23.0
2503 Female, age 72, unknown 22.3
1904 Male, age 53, unknown 21.8
1821 Female, age 72, unknown 21.2
1954 Female, age 42, unknown 18.7
Substantia nigra
nTPM: 33.9
2665 Male, age 74, both hemispheres 40.3
1941 Male, age 53, unknown 39.6
1916 Female, age 42, unknown 38.7
2699 Male, age 18, unknown 36.7
1851 Male, age 51, unknown 34.6
1889 Female, age 72, unknown 33.2
2583 Male, age 75, right hemisphere 30.2
2409 Female, age 72, unknown 29.7
2590 Female, age 75, unknown 28.6
2241 Male, age 72, unknown 27.1
Superior colliculus
nTPM: 29.5
2664 Male, age 75, both hemispheres 40.2
2261 Male, age 18, unknown 35.1
2087 Female, age 72, unknown 33.9
1796 Male, age 53, unknown 31.0
2587 Male, age 74, left hemisphere 28.3
1839 Male, age 51, unknown 27.5
1895 Male, age 76, right hemisphere 25.2
1995 Male, age 72, unknown 25.2
1913 Female, age 42, unknown 24.7
2668 Female, age 75, unknown 24.5
Ventral tegmental area
nTPM: 28.8
1915 Female, age 42, unknown 32.0
1942 Male, age 51, unknown 31.2
2410 Female, age 72, unknown 29.4
2021 Male, age 53, unknown 27.9
2218 Male, age 76, both hemispheres 27.7
2223 Female, age 72, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.5
Samples: 139

Max nTPM: 12.4
Min nTPM: 1.1
Std nTPM: 1.7
Median nTPM: 3.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 12.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 9.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 7.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 6.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 6.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 6.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 6.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 6.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 6.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.1
FF:10158-103A5 76 years, female 27.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.3
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.5
Sample A Female 10.1
Sample B Female 9.4
Sample C Male 10.1
Sample D Male 7.5
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 8.4
Sample C Male 10.1
Sample D Male 9.8
Periaqueductal gray
nTPM: 8.7
Samples: 3

Max nTPM: 9.5
Min nTPM: 8.2
Sample B Female 8.2
Sample C Male 9.5
Sample D Male 8.4
Superior colliculi
nTPM: 7.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 6.6
Sample A Female 8.2
Sample B Female 6.8
Sample C Male 6.6
Sample D Male 8.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 22.0
Sample A Male 23.1
Sample B Male 22.0
Sample C Female 22.4
Sample D Female 23.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69353209 Antisense, RP_050412_01_H01, Mouse strain C57BL/6J (56 days, male) 2.5

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