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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
391
Tumor
0.9
951
Tumor
0.8
665
Tumor
0.7
497
Tumor
0.7
231
Tumor
0.7
965
Tumor
0.7
567
Tumor
0.7
685
Tumor
0.7
661
Tumor
0.6
925
Tumor
0.6
277
Tumor
0.6
743
Tumor
0.6
425
Tumor
0.6
663
Tumor
0.6
737
Tumor
0.6
647
Tumor
0.6
615
Tumor
0.6
1021
Tumor
0.6
413
Tumor
0.6
537
Tumor
0.6
487
Tumor
0.5
463
Tumor
0.5
724
Normal
0.5
385
Tumor
0.5
427
Tumor
0.5
671
Tumor
0.5
411
Tumor
0.4
387
Tumor
0.4
483
Tumor
0.4
395
Tumor
0.4
983
Tumor
0.4
523
Tumor
0.4
813
Tumor
0.4
393
Tumor
0.4
943
Tumor
0.4
957
Tumor
0.4
211
Tumor
0.4
815
Tumor
0.4
367
Tumor
0.4
435
Tumor
0.4
493
Tumor
0.3
977
Tumor
0.3
388
Normal
0.3
533
Tumor
0.3
1013
Tumor
0.3
171
Tumor
0.3
123
Tumor
0.3
865
Tumor
0.3
527
Tumor
0.3
883
Tumor
0.3
573
Tumor
0.3
1025
Tumor
0.3
473
Tumor
0.3
967
Tumor
0.3
563
Tumor
0.3
727
Tumor
0.3
357
Tumor
0.3
431
Tumor
0.3
1045
Tumor
0.3
331
Tumor
0.3
517
Tumor
0.3
911
Tumor
0.3
341
Tumor
0.3
635
Tumor
0.3
535
Tumor
0.3
953
Tumor
0.3
741
Tumor
0.3
127
Tumor
0.2
913
Tumor
0.2
445
Tumor
0.2
392
Normal
0.2
817
Tumor
0.2
351
Tumor
0.2
426
Normal
0.2
268
Normal
0.2
221
Tumor
0.2
452
Normal
0.2
937
Tumor
0.2
863
Tumor
0.2
545
Tumor
0.2
467
Tumor
0.2
1027
Tumor
0.2
271
Tumor
0.2
314
Normal
0.2
814
Normal
0.2
257
Tumor
0.2
112
Tumor
0.2
491
Tumor
0.2
513
Tumor
0.2
715
Tumor
0.2
125
Tumor
0.2
571
Tumor
0.2
873
Tumor
0.2
423
Tumor
0.2
187
Tumor
0.2
451
Tumor
0.2
394
Normal
0.2
664
Normal
0.2
443
Tumor
0.2
433
Tumor
0.2
877
Tumor
0.2
1041
Tumor
0.2
1015
Tumor
0.2
383
Tumor
0.1
515
Tumor
0.1
921
Tumor
0.1
313
Tumor
0.1
376
Normal
0.1
396
Normal
0.1
131
Tumor
0.1
267
Tumor
0.1
648
Normal
0.1
777
Tumor
0.1
857
Tumor
0.1
384
Normal
0.1
421
Tumor
0.1
923
Tumor
0.1
456
Normal
0.1
1043
Tumor
0.1
311
Tumor
0.1
861
Tumor
0.1
297
Tumor
0.1
672
Normal
0.1
375
Tumor
0.1
191
Tumor
0.1
975
Tumor
0.1
744
Normal
0.1
697
Tumor
0.1
465
Tumor
0.1
227
Tumor
0.1
432
Normal
0.1
881
Tumor
0.1
464
Normal
0.1
468
Normal
0.1
915
Tumor
0.1
146
Normal
0.1
343
Tumor
0.1
627
Tumor
0.1
444
Normal
0.0
666
Normal
0.0
332
Normal
0.0
446
Normal
0.0
185
Tumor
0.0
161
Tumor
0.0
353
Tumor
0.0
422
Normal
0.0
135
Tumor
0.0
355
Tumor
0.0
477
Tumor
0.0
145
Tumor
0.0
362
Normal
0.0
354
Normal
0.0
954
Normal
0.0
361
Tumor
0.0
386
Normal
0.0
636
Normal
0.0
424
Normal
0.0
944
Normal
0.0
285
Tumor
0.0
618
Normal
0.0
786
Normal
0.0
142
Normal
0.0
368
Normal
0.0
963
Tumor
0.0
141
Tumor
0.0
557
Tumor
0.0
756
Normal
0.0
492
Normal
0.0
662
Normal
0.0
564
Normal
0.0
494
Normal
0.0
365
Tumor
0.0
111
Normal
0.0
745
Tumor
0.0
113
Tumor
0.0
851
Tumor
0.0
358
Normal
0.0
641
Tumor
0.0
713
Tumor
0.0
1031
Tumor
0.0
217
Tumor
0.0
213
Tumor
0.0
172
Normal
0.0
195
Tumor
0.0
728
Normal
0.0
912
Normal
0.0
867
Tumor
0.0
572
Normal
0.0
114
Normal
0.0
955
Tumor
0.0
312
Normal
0.0
366
Normal
0.0
714
Normal
0.0
484
Normal
0.0
188
Normal
0.0
723
Tumor
0.0
471
Tumor
0.0
162
Normal
0.0
525
Tumor
0.0
283
Tumor
-0.1
976
Normal
-0.1
553
Tumor
-0.1
722
Normal
-0.1
858
Normal
-0.1
917
Tumor
-0.1
223
Tumor
-0.1
356
Normal
-0.1
696
Normal
-0.1
695
Tumor
-0.1
488
Normal
-0.1
938
Normal
-0.1
466
Normal
-0.1
461
Tumor
-0.1
148
Normal
-0.1
455
Tumor
-0.1
126
Normal
-0.1
447
Tumor
-0.1
926
Normal
-0.1
498
Normal
-0.1
436
Normal
-0.1
868
Normal
-0.1
882
Normal
-0.1
642
Normal
-0.1
232
Normal
-0.1
874
Normal
-0.1
823
Tumor
-0.1
864
Normal
-0.1
415
Tumor
-0.1
922
Normal
-0.1
568
Normal
-0.1
628
Normal
-0.1
363
Tumor
-0.1
416
Normal
-0.1
132
Normal
-0.1
866
Normal
-0.1
617
Tumor
-0.1
914
Normal
-0.1
686
Normal
-0.1
228
Normal
-0.1
124
Normal
-0.1
278
Normal
-0.1
964
Normal
-0.1
272
Normal
-0.1
824
Normal
-0.1
261
Tumor
-0.1
186
Normal
-0.1
616
Normal
-0.1
1032
Normal
-0.1
916
Normal
-0.1
428
Normal
-0.1
138
Normal
-0.1
412
Normal
-0.1
818
Normal
-0.1
528
Normal
-0.1
742
Normal
-0.1
534
Normal
-0.1
984
Normal
-0.2
128
Normal
-0.2
738
Normal
-0.2
327
Tumor
-0.2
716
Normal
-0.2
262
Normal
-0.2
574
Normal
-0.2
224
Normal
-0.2
284
Normal
-0.2
755
Tumor
-0.2
956
Normal
-0.2
364
Normal
-0.2
328
Normal
-0.2
137
Tumor
-0.2
958
Normal
-0.2
352
Normal
-0.2
192
Normal
-0.2
524
Normal
-0.2
481
Tumor
-0.2
884
Normal
-0.2
344
Normal
-0.2
286
Normal
-0.2
862
Normal
-0.2
147
Tumor
-0.2
448
Normal
-0.2
785
Tumor
-0.2
1014
Normal
-0.2
212
Normal
-0.2
258
Normal
-0.2
434
Normal
-0.2
966
Normal
-0.2
462
Normal
-0.2
414
Normal
-0.2
546
Normal
-0.2
298
Normal
-0.2
952
Normal
-0.2
538
Normal
-0.2
1042
Normal
-0.2
1046
Normal
-0.2
924
Normal
-0.2
878
Normal
-0.2
558
Normal
-0.2
514
Normal
-0.2
526
Normal
-0.2
1028
Normal
-0.2
778
Normal
-0.2
342
Normal
-0.3
852
Normal
-0.3
482
Normal
-0.3
981
Tumor
-0.3
1016
Normal
-0.3
1044
Normal
-0.3
214
Normal
-0.3
721
Tumor
-0.3
918
Normal
-0.3
136
Normal
-0.3
1026
Normal
-0.3
968
Normal
-0.3
218
Normal
-0.3
518
Normal
-0.3
222
Normal
-0.3
516
Normal
-0.3
536
Normal
-0.3
978
Normal
-0.3
554
Normal
-0.3
746
Normal
-0.3
816
Normal
-0.3
478
Normal
-0.3
698
Normal
-0.3
1022
Normal
-0.3
196
Normal
-0.4
472
Normal
-0.4
982
Normal
-0.4
474
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
