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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIPF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
31.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIPF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
98.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
64.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
56.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
56.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
50.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
40.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
33.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
31.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
28.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.7
925
Tumor
1.6
911
Tumor
1.6
913
Tumor
1.6
745
Tumor
1.4
937
Tumor
1.2
635
Tumor
1.1
527
Tumor
0.9
257
Tumor
0.9
533
Tumor
0.9
863
Tumor
0.9
1027
Tumor
0.9
873
Tumor
0.8
113
Tumor
0.8
537
Tumor
0.8
573
Tumor
0.8
861
Tumor
0.8
376
Normal
0.7
411
Tumor
0.7
384
Normal
0.7
125
Tumor
0.7
473
Tumor
0.7
451
Tumor
0.6
785
Tumor
0.6
967
Tumor
0.6
1021
Tumor
0.6
227
Tumor
0.6
755
Tumor
0.6
368
Normal
0.6
615
Tumor
0.6
427
Tumor
0.6
865
Tumor
0.6
212
Normal
0.6
223
Tumor
0.6
741
Tumor
0.6
465
Tumor
0.5
557
Tumor
0.5
362
Normal
0.5
517
Tumor
0.5
361
Tumor
0.5
267
Tumor
0.5
647
Tumor
0.5
1013
Tumor
0.5
341
Tumor
0.5
366
Normal
0.5
571
Tumor
0.4
487
Tumor
0.4
526
Normal
0.4
823
Tumor
0.4
881
Tumor
0.4
697
Tumor
0.4
957
Tumor
0.4
393
Tumor
0.4
145
Tumor
0.4
513
Tumor
0.4
978
Normal
0.4
128
Normal
0.4
1031
Tumor
0.4
283
Tumor
0.4
523
Tumor
0.4
298
Normal
0.4
857
Tumor
0.4
327
Tumor
0.4
126
Normal
0.4
951
Tumor
0.4
191
Tumor
0.4
356
Normal
0.3
1045
Tumor
0.3
883
Tumor
0.3
1014
Normal
0.3
171
Tumor
0.3
923
Tumor
0.3
423
Tumor
0.3
147
Tumor
0.3
641
Tumor
0.3
342
Normal
0.3
724
Normal
0.3
477
Tumor
0.3
1015
Tumor
0.3
851
Tumor
0.3
231
Tumor
0.3
187
Tumor
0.3
867
Tumor
0.3
515
Tumor
0.3
665
Tumor
0.3
1041
Tumor
0.3
395
Tumor
0.3
365
Tumor
0.3
878
Normal
0.3
953
Tumor
0.3
111
Normal
0.3
525
Tumor
0.2
114
Normal
0.2
617
Tumor
0.2
977
Tumor
0.2
127
Tumor
0.2
112
Tumor
0.2
627
Tumor
0.2
524
Normal
0.2
452
Normal
0.2
553
Tumor
0.2
636
Normal
0.2
528
Normal
0.2
518
Normal
0.2
642
Normal
0.2
545
Tumor
0.2
224
Normal
0.2
983
Tumor
0.2
685
Tumor
0.2
514
Normal
0.2
744
Normal
0.2
367
Tumor
0.2
271
Tumor
0.2
388
Normal
0.2
124
Normal
0.2
618
Normal
0.2
464
Normal
0.2
232
Normal
0.2
258
Normal
0.2
818
Normal
0.2
357
Tumor
0.2
1025
Tumor
0.2
354
Normal
0.1
314
Normal
0.1
394
Normal
0.1
1043
Tumor
0.1
228
Normal
0.1
984
Normal
0.1
921
Tumor
0.1
221
Tumor
0.1
344
Normal
0.1
195
Tumor
0.1
981
Tumor
0.1
132
Normal
0.1
123
Tumor
0.1
358
Normal
0.1
383
Tumor
0.1
466
Normal
0.1
737
Tumor
0.1
332
Normal
0.1
272
Normal
0.1
535
Tumor
0.1
975
Tumor
0.1
412
Normal
0.1
868
Normal
0.1
456
Normal
0.1
138
Normal
0.1
616
Normal
0.1
141
Tumor
0.1
481
Tumor
0.1
965
Tumor
0.0
488
Normal
0.0
136
Normal
0.0
387
Tumor
0.0
663
Tumor
0.0
817
Tumor
0.0
516
Normal
0.0
284
Normal
0.0
268
Normal
0.0
391
Tumor
0.0
142
Normal
0.0
534
Normal
0.0
815
Tumor
0.0
858
Normal
0.0
386
Normal
0.0
261
Tumor
0.0
884
Normal
0.0
218
Normal
0.0
146
Normal
0.0
874
Normal
0.0
351
Tumor
0.0
955
Tumor
0.0
462
Normal
0.0
471
Tumor
0.0
482
Normal
0.0
468
Normal
0.0
392
Normal
0.0
982
Normal
0.0
661
Tumor
0.0
343
Tumor
0.0
213
Tumor
0.0
474
Normal
0.0
148
Normal
-0.1
964
Normal
-0.1
262
Normal
-0.1
396
Normal
-0.1
648
Normal
-0.1
778
Normal
-0.1
824
Normal
-0.1
968
Normal
-0.1
461
Tumor
-0.1
915
Tumor
-0.1
943
Tumor
-0.1
738
Normal
-0.1
467
Tumor
-0.1
185
Tumor
-0.1
538
Normal
-0.1
554
Normal
-0.1
742
Normal
-0.1
137
Tumor
-0.1
721
Tumor
-0.1
211
Tumor
-0.1
963
Tumor
-0.1
286
Normal
-0.1
285
Tumor
-0.1
217
Tumor
-0.1
448
Normal
-0.1
483
Tumor
-0.1
196
Normal
-0.1
421
Tumor
-0.1
563
Tumor
-0.1
416
Normal
-0.1
852
Normal
-0.1
727
Tumor
-0.1
328
Normal
-0.1
916
Normal
-0.1
662
Normal
-0.1
666
Normal
-0.1
491
Tumor
-0.1
278
Normal
-0.1
866
Normal
-0.1
567
Tumor
-0.1
672
Normal
-0.1
463
Tumor
-0.1
135
Tumor
-0.1
498
Normal
-0.2
728
Normal
-0.2
363
Tumor
-0.2
1044
Normal
-0.2
628
Normal
-0.2
1028
Normal
-0.2
186
Normal
-0.2
944
Normal
-0.2
864
Normal
-0.2
536
Normal
-0.2
816
Normal
-0.2
956
Normal
-0.2
493
Tumor
-0.2
425
Tumor
-0.2
862
Normal
-0.2
161
Tumor
-0.2
914
Normal
-0.2
355
Tumor
-0.2
222
Normal
-0.2
214
Normal
-0.2
415
Tumor
-0.2
162
Normal
-0.2
723
Tumor
-0.2
172
Normal
-0.2
952
Normal
-0.2
494
Normal
-0.2
353
Tumor
-0.2
938
Normal
-0.2
1026
Normal
-0.2
447
Tumor
-0.2
1016
Normal
-0.2
1042
Normal
-0.2
413
Tumor
-0.2
664
Normal
-0.2
277
Tumor
-0.2
746
Normal
-0.2
954
Normal
-0.2
1046
Normal
-0.3
312
Normal
-0.3
472
Normal
-0.3
375
Tumor
-0.3
478
Normal
-0.3
786
Normal
-0.3
364
Normal
-0.3
1032
Normal
-0.3
926
Normal
-0.3
924
Normal
-0.3
484
Normal
-0.3
492
Normal
-0.3
698
Normal
-0.3
882
Normal
-0.3
546
Normal
-0.3
696
Normal
-0.3
922
Normal
-0.4
1022
Normal
-0.4
352
Normal
-0.4
131
Tumor
-0.4
686
Normal
-0.4
756
Normal
-0.4
455
Tumor
-0.4
188
Normal
-0.4
976
Normal
-0.4
564
Normal
-0.4
918
Normal
-0.4
814
Normal
-0.4
192
Normal
-0.4
424
Normal
-0.4
917
Tumor
-0.4
671
Tumor
-0.4
695
Tumor
-0.4
426
Normal
-0.5
313
Tumor
-0.5
966
Normal
-0.5
713
Tumor
-0.5
574
Normal
-0.5
558
Normal
-0.5
743
Tumor
-0.5
568
Normal
-0.5
714
Normal
-0.5
958
Normal
-0.5
716
Normal
-0.5
497
Tumor
-0.5
912
Normal
-0.6
385
Tumor
-0.6
428
Normal
-0.6
422
Normal
-0.6
414
Normal
-0.6
572
Normal
-0.6
877
Tumor
-0.7
715
Tumor
-0.7
722
Normal
-0.8
311
Tumor
-0.8
297
Tumor
-0.8
813
Tumor
-0.9
331
Tumor
-1.4
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
