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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZC3H11A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZC3H11A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.6
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
116.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
103.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
99.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
86.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
82.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
79.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
79.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
78.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
75.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
73.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
72.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
71.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
70.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
69.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
68.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
67.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
67.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
65.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
63.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
63.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
63.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
62.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
61.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
60.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
59.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
59.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
59.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
59.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
59.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
59.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
58.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
55.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
55.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
55.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
54.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
54.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
53.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
52.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
51.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
50.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
50.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
50.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
49.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
47.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
46.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
45.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
44.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
44.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
44.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
44.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
44.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
42.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
41.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
41.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
41.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
41.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
41.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
40.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
38.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
37.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
31.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.3
977
Tumor
0.9
965
Tumor
0.9
211
Tumor
0.8
313
Tumor
0.8
131
Tumor
0.7
814
Normal
0.7
473
Tumor
0.7
724
Normal
0.6
695
Tumor
0.6
533
Tumor
0.6
351
Tumor
0.6
813
Tumor
0.6
357
Tumor
0.6
943
Tumor
0.6
1031
Tumor
0.5
953
Tumor
0.5
1013
Tumor
0.5
411
Tumor
0.5
527
Tumor
0.5
491
Tumor
0.5
447
Tumor
0.5
545
Tumor
0.5
355
Tumor
0.5
975
Tumor
0.5
523
Tumor
0.5
331
Tumor
0.5
743
Tumor
0.4
777
Tumor
0.4
161
Tumor
0.4
385
Tumor
0.4
477
Tumor
0.4
685
Tumor
0.4
877
Tumor
0.4
553
Tumor
0.4
517
Tumor
0.4
983
Tumor
0.4
497
Tumor
0.4
425
Tumor
0.4
481
Tumor
0.4
923
Tumor
0.4
881
Tumor
0.4
867
Tumor
0.3
537
Tumor
0.3
431
Tumor
0.3
393
Tumor
0.3
785
Tumor
0.3
415
Tumor
0.3
963
Tumor
0.3
554
Normal
0.3
297
Tumor
0.3
967
Tumor
0.3
727
Tumor
0.3
493
Tumor
0.3
484
Normal
0.3
487
Tumor
0.3
966
Normal
0.3
112
Tumor
0.3
135
Tumor
0.2
737
Tumor
0.2
858
Normal
0.2
571
Tumor
0.2
818
Normal
0.2
445
Tumor
0.2
465
Tumor
0.2
1021
Tumor
0.2
857
Tumor
0.2
912
Normal
0.2
1026
Normal
0.2
955
Tumor
0.2
958
Normal
0.2
277
Tumor
0.2
824
Normal
0.2
964
Normal
0.2
865
Tumor
0.2
443
Tumor
0.2
882
Normal
0.2
823
Tumor
0.2
546
Normal
0.2
1041
Tumor
0.2
471
Tumor
0.2
383
Tumor
0.2
1046
Normal
0.2
715
Tumor
0.2
647
Tumor
0.2
524
Normal
0.2
213
Tumor
0.2
921
Tumor
0.2
343
Tumor
0.2
472
Normal
0.2
926
Normal
0.1
915
Tumor
0.1
534
Normal
0.1
1032
Normal
0.1
461
Tumor
0.1
364
Normal
0.1
535
Tumor
0.1
1014
Normal
0.1
721
Tumor
0.1
1042
Normal
0.1
917
Tumor
0.1
433
Tumor
0.1
756
Normal
0.1
123
Tumor
0.1
723
Tumor
0.1
883
Tumor
0.1
755
Tumor
0.1
984
Normal
0.1
968
Normal
0.1
141
Tumor
0.1
231
Tumor
0.1
944
Normal
0.1
416
Normal
0.1
448
Normal
0.1
328
Normal
0.1
1025
Tumor
0.1
463
Tumor
0.1
478
Normal
0.1
742
Normal
0.1
878
Normal
0.1
884
Normal
0.1
728
Normal
0.1
741
Tumor
0.1
1045
Tumor
0.1
852
Normal
0.1
817
Tumor
0.1
271
Tumor
0.1
714
Normal
0.1
412
Normal
0.1
976
Normal
0.1
474
Normal
0.1
873
Tumor
0.1
697
Tumor
0.1
1015
Tumor
0.1
713
Tumor
0.1
327
Tumor
0.1
298
Normal
0.1
911
Tumor
0.1
557
Tumor
0.1
492
Normal
0.1
536
Normal
0.1
261
Tumor
0.1
698
Normal
0.1
978
Normal
0.1
671
Tumor
0.1
918
Normal
0.1
744
Normal
0.1
1022
Normal
0.1
528
Normal
0.1
482
Normal
0.1
786
Normal
0.1
494
Normal
0.1
341
Tumor
0.1
488
Normal
0.1
745
Tumor
0.1
1043
Tumor
0.1
874
Normal
0.1
938
Normal
0.0
396
Normal
0.0
778
Normal
0.0
525
Tumor
0.0
862
Normal
0.0
514
Normal
0.0
696
Normal
0.0
952
Normal
0.0
455
Tumor
0.0
518
Normal
0.0
666
Normal
0.0
816
Normal
0.0
413
Tumor
0.0
924
Normal
0.0
171
Tumor
0.0
981
Tumor
0.0
661
Tumor
0.0
951
Tumor
0.0
662
Normal
0.0
572
Normal
0.0
686
Normal
0.0
361
Tumor
0.0
864
Normal
0.0
462
Normal
0.0
483
Tumor
0.0
1044
Normal
0.0
922
Normal
0.0
672
Normal
0.0
665
Tumor
0.0
716
Normal
0.0
664
Normal
0.0
866
Normal
0.0
937
Tumor
0.0
513
Tumor
0.0
863
Tumor
0.0
615
Tumor
0.0
367
Tumor
0.0
954
Normal
0.0
192
Normal
0.0
467
Tumor
0.0
567
Tumor
0.0
376
Normal
0.0
283
Tumor
0.0
1028
Normal
0.0
956
Normal
0.0
498
Normal
0.0
538
Normal
0.0
516
Normal
0.0
558
Normal
0.0
515
Tumor
0.0
352
Normal
0.0
312
Normal
0.0
738
Normal
0.0
526
Normal
0.0
568
Normal
0.0
648
Normal
0.0
142
Normal
0.0
232
Normal
0.0
368
Normal
0.0
746
Normal
0.0
1027
Tumor
0.0
366
Normal
0.0
916
Normal
0.0
227
Tumor
0.0
435
Tumor
0.0
386
Normal
0.0
982
Normal
0.0
444
Normal
-0.1
628
Normal
-0.1
616
Normal
-0.1
456
Normal
-0.1
861
Tumor
-0.1
272
Normal
-0.1
375
Tumor
-0.1
224
Normal
-0.1
428
Normal
-0.1
573
Tumor
-0.1
148
Normal
-0.1
191
Tumor
-0.1
868
Normal
-0.1
145
Tumor
-0.1
426
Normal
-0.1
284
Normal
-0.1
114
Normal
-0.1
464
Normal
-0.1
636
Normal
-0.1
391
Tumor
-0.1
925
Tumor
-0.1
111
Normal
-0.1
362
Normal
-0.1
172
Normal
-0.1
268
Normal
-0.1
421
Tumor
-0.1
564
Normal
-0.1
146
Normal
-0.1
267
Tumor
-0.1
258
Normal
-0.1
1016
Normal
-0.1
722
Normal
-0.1
196
Normal
-0.1
314
Normal
-0.1
423
Tumor
-0.1
358
Normal
-0.1
257
Tumor
-0.1
147
Tumor
-0.1
286
Normal
-0.1
387
Tumor
-0.1
424
Normal
-0.1
311
Tumor
-0.1
113
Tumor
-0.1
851
Tumor
-0.1
356
Normal
-0.1
212
Normal
-0.1
384
Normal
-0.1
332
Normal
-0.1
414
Normal
-0.1
132
Normal
-0.1
913
Tumor
-0.1
278
Normal
-0.1
137
Tumor
-0.1
125
Tumor
-0.1
618
Normal
-0.1
162
Normal
-0.1
434
Normal
-0.1
221
Tumor
-0.1
436
Normal
-0.1
354
Normal
-0.1
188
Normal
-0.1
186
Normal
-0.1
574
Normal
-0.1
228
Normal
-0.1
365
Tumor
-0.1
914
Normal
-0.1
388
Normal
-0.1
217
Tumor
-0.2
663
Tumor
-0.2
392
Normal
-0.2
422
Normal
-0.2
222
Normal
-0.2
642
Normal
-0.2
262
Normal
-0.2
468
Normal
-0.2
451
Tumor
-0.2
128
Normal
-0.2
127
Tumor
-0.2
195
Tumor
-0.2
427
Tumor
-0.2
641
Tumor
-0.2
466
Normal
-0.2
363
Tumor
-0.2
394
Normal
-0.2
617
Tumor
-0.2
815
Tumor
-0.2
136
Normal
-0.2
126
Normal
-0.2
214
Normal
-0.2
187
Tumor
-0.2
218
Normal
-0.2
138
Normal
-0.2
342
Normal
-0.2
563
Tumor
-0.2
446
Normal
-0.3
432
Normal
-0.3
627
Tumor
-0.3
223
Tumor
-0.3
185
Tumor
-0.3
124
Normal
-0.3
285
Tumor
-0.3
344
Normal
-0.3
353
Tumor
-0.3
635
Tumor
-0.3
452
Normal
-0.3
395
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
