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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC61A1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
89.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
407.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
333.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
324.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
305.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
305.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
291.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
287.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
266.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
249.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
248.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
248.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
237.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
233.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
221.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
219.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
217.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
215.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
214.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
213.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
208.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
207.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
207.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
204.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
202.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
187.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
186.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
186.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
185.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
185.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
181.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
179.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
178.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
173.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
172.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
172.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
171.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
170.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
169.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
168.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
167.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
167.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
165.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
163.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
161.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
160.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
159.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
158.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
157.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
157.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
157.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
154.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
151.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
151.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
150.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
148.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
148.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
148.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
147.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
143.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
143.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
141.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
141.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
140.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
138.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
136.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
135.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
135.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
135.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
134.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
134.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
134.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
133.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
132.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
132.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
131.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
131.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
130.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
129.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
129.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
129.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
127.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
127.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
126.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
126.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
126.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
125.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
124.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
124.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
124.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
123.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
122.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
122.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
122.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
121.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
119.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
119.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
118.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
118.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
118.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
118.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
117.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
117.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
117.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
116.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
116.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
116.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
115.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
114.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
113.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
113.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
113.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
112.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
112.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
112.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
111.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
110.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
110.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
108.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
108.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
108.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
108.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
107.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
107.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
107.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
105.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
105.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
104.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
103.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
103.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
103.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
100.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
100.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
99.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
98.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
98.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
98.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
98.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
97.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
97.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
97.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
97.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
97.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
96.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
96.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
95.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
94.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
94.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
93.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
93.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
93.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
93.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
92.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
92.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
92.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
92.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
92.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
91.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
90.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
90.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
90.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
89.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
88.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
88.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
88.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
87.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
87.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
87.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
87.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
87.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
87.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
86.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
85.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
85.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
85.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
83.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
83.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
83.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
82.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
82.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
82.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
82.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
81.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
80.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
80.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
80.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
80.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
79.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
78.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
78.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
78.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
78.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
78.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
77.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
76.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
76.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
76.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
74.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
74.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
73.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
72.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
72.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
72.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
71.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
70.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
70.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
70.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
68.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
68.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
67.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
66.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
66.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
65.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
65.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
65.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
65.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
64.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
64.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
64.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
64.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
63.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
63.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
61.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
61.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
60.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
58.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
57.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
57.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
56.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
55.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
55.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
55.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
53.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
52.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
52.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
52.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
52.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
51.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
51.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
49.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
49.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
49.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
48.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
45.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
42.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
42.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
42.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
40.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
34.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
30.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
28.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SEC61A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
106.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
298.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
272.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
265.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
252.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
247.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
244.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
242.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
231.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
217.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
211.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
206.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
204.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
199.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
198.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
196.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
194.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
192.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
190.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
181.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
180.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
177.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
175.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
174.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
170.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
163.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
163.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
163.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
162.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
161.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
156.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
155.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
155.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
155.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
154.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
148.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
148.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
146.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
145.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
142.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
141.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
139.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
138.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
137.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
134.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
133.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
132.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
132.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
131.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
129.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
128.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
127.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
126.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
126.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
126.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
125.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
123.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
122.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
122.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
121.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
120.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
120.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
120.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
119.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
118.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
117.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
117.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
116.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
116.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
113.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
112.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
112.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
112.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
112.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
112.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
111.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
110.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
110.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
110.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
109.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
109.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
109.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
109.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
108.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
108.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
108.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
107.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
106.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
105.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
105.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
104.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
104.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
104.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
103.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
102.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
102.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
101.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
101.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
100.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
100.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
98.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
98.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
98.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
97.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
96.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
96.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
96.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
96.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
96.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
96.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
95.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
95.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
95.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
94.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
94.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
93.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
93.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
92.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
92.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
92.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
91.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
90.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
90.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
90.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
90.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
90.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
89.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
89.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
89.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
88.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
88.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
88.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
88.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
88.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
87.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
87.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
87.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
87.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
86.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
85.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
85.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
85.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
84.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
84.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
84.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
84.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
84.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
84.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
83.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
82.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
82.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
82.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
82.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
82.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
82.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
81.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
81.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
81.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
80.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
80.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
80.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
79.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
79.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
79.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
79.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
79.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
78.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
78.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
77.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
77.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
77.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
77.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
77.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
77.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
76.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
76.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
76.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
75.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
74.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
74.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
74.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
73.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
73.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
72.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
72.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
72.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
72.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
70.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
70.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
69.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
69.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
68.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
68.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
67.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
67.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
66.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
65.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
65.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
64.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
64.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
64.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
62.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
60.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
60.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
60.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
59.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
58.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
54.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
52.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
50.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
48.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
47.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
46.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
44.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
40.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
39.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
452
Normal
0.5
467
Tumor
0.4
868
Normal
0.4
286
Normal
0.4
557
Tumor
0.4
636
Normal
0.3
353
Tumor
0.3
332
Normal
0.3
388
Normal
0.3
1026
Normal
0.3
392
Normal
0.3
111
Normal
0.3
277
Tumor
0.3
222
Normal
0.3
1016
Normal
0.3
358
Normal
0.3
864
Normal
0.3
394
Normal
0.3
446
Normal
0.3
436
Normal
0.3
914
Normal
0.3
395
Tumor
0.3
214
Normal
0.3
742
Normal
0.3
223
Tumor
0.3
218
Normal
0.2
113
Tumor
0.2
982
Normal
0.2
135
Tumor
0.2
481
Tumor
0.2
414
Normal
0.2
464
Normal
0.2
278
Normal
0.2
737
Tumor
0.2
186
Normal
0.2
456
Normal
0.2
978
Normal
0.2
432
Normal
0.2
284
Normal
0.2
422
Normal
0.2
448
Normal
0.2
228
Normal
0.2
396
Normal
0.2
386
Normal
0.2
258
Normal
0.2
728
Normal
0.2
824
Normal
0.2
912
Normal
0.2
421
Tumor
0.2
968
Normal
0.2
862
Normal
0.2
527
Tumor
0.2
926
Normal
0.2
212
Normal
0.2
721
Tumor
0.2
172
Normal
0.2
1014
Normal
0.2
162
Normal
0.2
314
Normal
0.2
866
Normal
0.2
327
Tumor
0.2
428
Normal
0.2
196
Normal
0.2
128
Normal
0.2
376
Normal
0.2
528
Normal
0.2
444
Normal
0.2
114
Normal
0.2
434
Normal
0.2
937
Tumor
0.2
648
Normal
0.2
136
Normal
0.2
1044
Normal
0.2
368
Normal
0.2
138
Normal
0.2
462
Normal
0.2
518
Normal
0.2
142
Normal
0.2
195
Tumor
0.2
526
Normal
0.2
662
Normal
0.2
132
Normal
0.2
778
Normal
0.2
1022
Normal
0.2
298
Normal
0.1
952
Normal
0.1
472
Normal
0.1
466
Normal
0.1
938
Normal
0.1
232
Normal
0.1
497
Tumor
0.1
468
Normal
0.1
571
Tumor
0.1
342
Normal
0.1
918
Normal
0.1
738
Normal
0.1
878
Normal
0.1
217
Tumor
0.1
786
Normal
0.1
813
Tumor
0.1
664
Normal
0.1
944
Normal
0.1
628
Normal
0.1
125
Tumor
0.1
955
Tumor
0.1
966
Normal
0.1
474
Normal
0.1
124
Normal
0.1
723
Tumor
0.1
367
Tumor
0.1
746
Normal
0.1
1042
Normal
0.1
554
Normal
0.1
816
Normal
0.1
964
Normal
0.1
666
Normal
0.1
272
Normal
0.1
262
Normal
0.1
424
Normal
0.1
146
Normal
0.1
534
Normal
0.1
145
Tumor
0.1
546
Normal
0.1
616
Normal
0.1
573
Tumor
0.1
443
Tumor
0.1
713
Tumor
0.1
696
Normal
0.1
412
Normal
0.1
224
Normal
0.1
257
Tumor
0.1
852
Normal
0.1
568
Normal
0.1
494
Normal
0.1
863
Tumor
0.1
426
Normal
0.1
137
Tumor
0.1
618
Normal
0.1
375
Tumor
0.1
331
Tumor
0.1
874
Normal
0.1
984
Normal
0.1
126
Normal
0.1
482
Normal
0.1
1028
Normal
0.1
384
Normal
0.1
922
Normal
0.1
344
Normal
0.1
564
Normal
0.1
387
Tumor
0.1
574
Normal
0.1
1015
Tumor
0.1
366
Normal
0.1
663
Tumor
0.0
956
Normal
0.0
451
Tumor
0.0
722
Normal
0.0
148
Normal
0.0
362
Normal
0.0
1025
Tumor
0.0
463
Tumor
0.0
976
Normal
0.0
356
Normal
0.0
777
Tumor
0.0
698
Normal
0.0
416
Normal
0.0
913
Tumor
0.0
354
Normal
0.0
313
Tumor
0.0
393
Tumor
0.0
488
Normal
0.0
558
Normal
0.0
285
Tumor
0.0
536
Normal
0.0
642
Normal
0.0
815
Tumor
0.0
268
Normal
0.0
191
Tumor
0.0
312
Normal
0.0
617
Tumor
0.0
147
Tumor
0.0
221
Tumor
0.0
433
Tumor
0.0
1046
Normal
0.0
851
Tumor
0.0
112
Tumor
0.0
882
Normal
0.0
745
Tumor
0.0
514
Normal
0.0
328
Normal
0.0
227
Tumor
0.0
267
Tumor
0.0
756
Normal
0.0
484
Normal
0.0
954
Normal
0.0
1032
Normal
0.0
916
Normal
0.0
1027
Tumor
0.0
192
Normal
0.0
341
Tumor
0.0
352
Normal
0.0
865
Tumor
0.0
188
Normal
0.0
123
Tumor
0.0
716
Normal
0.0
141
Tumor
0.0
672
Normal
0.0
981
Tumor
0.0
383
Tumor
0.0
858
Normal
0.0
615
Tumor
0.0
515
Tumor
0.0
958
Normal
0.0
714
Normal
0.0
686
Normal
0.0
877
Tumor
0.0
743
Tumor
0.0
524
Normal
-0.1
818
Normal
-0.1
924
Normal
-0.1
364
Normal
-0.1
814
Normal
-0.1
423
Tumor
-0.1
567
Tumor
-0.1
185
Tumor
-0.1
445
Tumor
-0.1
538
Normal
-0.1
983
Tumor
-0.1
1021
Tumor
-0.1
213
Tumor
-0.1
492
Normal
-0.1
697
Tumor
-0.1
161
Tumor
-0.1
884
Normal
-0.1
478
Normal
-0.1
425
Tumor
-0.1
187
Tumor
-0.1
413
Tumor
-0.1
357
Tumor
-0.1
917
Tumor
-0.1
724
Normal
-0.1
363
Tumor
-0.1
823
Tumor
-0.1
465
Tumor
-0.1
1043
Tumor
-0.1
431
Tumor
-0.1
355
Tumor
-0.1
311
Tumor
-0.1
572
Normal
-0.1
727
Tumor
-0.1
545
Tumor
-0.1
365
Tumor
-0.1
513
Tumor
-0.1
411
Tumor
-0.1
537
Tumor
-0.1
647
Tumor
-0.1
343
Tumor
-0.1
385
Tumor
-0.1
943
Tumor
-0.1
516
Normal
-0.1
661
Tumor
-0.2
883
Tumor
-0.2
455
Tumor
-0.2
461
Tumor
-0.2
361
Tumor
-0.2
857
Tumor
-0.2
283
Tumor
-0.2
671
Tumor
-0.2
435
Tumor
-0.2
261
Tumor
-0.2
963
Tumor
-0.2
498
Normal
-0.2
271
Tumor
-0.2
493
Tumor
-0.2
171
Tumor
-0.2
744
Normal
-0.2
535
Tumor
-0.2
127
Tumor
-0.2
785
Tumor
-0.2
523
Tumor
-0.2
391
Tumor
-0.2
755
Tumor
-0.2
685
Tumor
-0.2
861
Tumor
-0.2
741
Tumor
-0.2
873
Tumor
-0.2
297
Tumor
-0.2
415
Tumor
-0.2
447
Tumor
-0.2
817
Tumor
-0.2
1045
Tumor
-0.2
211
Tumor
-0.3
977
Tumor
-0.3
491
Tumor
-0.3
533
Tumor
-0.3
923
Tumor
-0.3
427
Tumor
-0.3
563
Tumor
-0.3
1013
Tumor
-0.3
911
Tumor
-0.3
473
Tumor
-0.3
665
Tumor
-0.3
517
Tumor
-0.3
231
Tumor
-0.3
881
Tumor
-0.3
477
Tumor
-0.3
351
Tumor
-0.3
867
Tumor
-0.3
925
Tumor
-0.3
957
Tumor
-0.3
627
Tumor
-0.3
483
Tumor
-0.4
965
Tumor
-0.4
975
Tumor
-0.4
525
Tumor
-0.4
953
Tumor
-0.4
1041
Tumor
-0.4
921
Tumor
-0.4
635
Tumor
-0.5
487
Tumor
-0.5
1031
Tumor
-0.5
951
Tumor
-0.5
131
Tumor
-0.5
471
Tumor
-0.5
695
Tumor
-0.5
915
Tumor
-0.5
967
Tumor
-0.5
641
Tumor
-0.5
553
Tumor
-0.5
715
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.