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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
2.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMCC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.7
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.7
953
Tumor
1.4
375
Tumor
1.3
343
Tumor
1.2
311
Tumor
1.2
925
Tumor
1.2
1013
Tumor
1.1
921
Tumor
1.1
277
Tumor
0.9
427
Tumor
0.9
395
Tumor
0.9
313
Tumor
0.8
663
Tumor
0.8
647
Tumor
0.8
491
Tumor
0.8
145
Tumor
0.8
943
Tumor
0.8
455
Tumor
0.8
355
Tumor
0.8
573
Tumor
0.8
447
Tumor
0.8
635
Tumor
0.7
563
Tumor
0.7
211
Tumor
0.7
917
Tumor
0.7
147
Tumor
0.7
1027
Tumor
0.7
737
Tumor
0.7
443
Tumor
0.7
221
Tumor
0.7
567
Tumor
0.7
533
Tumor
0.7
745
Tumor
0.6
213
Tumor
0.6
463
Tumor
0.6
641
Tumor
0.6
487
Tumor
0.6
161
Tumor
0.6
341
Tumor
0.5
411
Tumor
0.5
497
Tumor
0.5
515
Tumor
0.5
525
Tumor
0.5
537
Tumor
0.5
545
Tumor
0.5
865
Tumor
0.5
884
Normal
0.5
445
Tumor
0.4
493
Tumor
0.4
571
Tumor
0.4
523
Tumor
0.4
937
Tumor
0.4
857
Tumor
0.4
882
Normal
0.4
912
Normal
0.4
431
Tumor
0.4
864
Normal
0.3
191
Tumor
0.3
357
Tumor
0.3
195
Tumor
0.3
536
Normal
0.3
444
Normal
0.3
423
Tumor
0.3
492
Normal
0.2
881
Tumor
0.2
461
Tumor
0.2
135
Tumor
0.2
141
Tumor
0.2
727
Tumor
0.2
672
Normal
0.2
383
Tumor
0.2
223
Tumor
0.2
267
Tumor
0.2
483
Tumor
0.2
498
Normal
0.2
344
Normal
0.2
874
Normal
0.2
192
Normal
0.1
488
Normal
0.1
297
Tumor
0.1
878
Normal
0.1
283
Tumor
0.1
327
Tumor
0.1
185
Tumor
0.1
636
Normal
0.1
666
Normal
0.1
425
Tumor
0.1
477
Tumor
0.1
1014
Normal
0.1
954
Normal
0.1
923
Tumor
0.1
823
Tumor
0.1
916
Normal
0.1
467
Tumor
0.1
1043
Tumor
0.1
387
Tumor
0.0
695
Tumor
0.0
868
Normal
0.0
877
Tumor
0.0
975
Tumor
0.0
162
Normal
0.0
224
Normal
0.0
665
Tumor
0.0
172
Normal
0.0
392
Normal
0.0
435
Tumor
0.0
538
Normal
0.0
146
Normal
0.0
421
Tumor
0.0
131
Tumor
0.0
342
Normal
0.0
268
Normal
0.0
231
Tumor
0.0
473
Tumor
0.0
873
Tumor
0.0
284
Normal
0.0
368
Normal
0.0
574
Normal
0.0
662
Normal
0.0
228
Normal
0.0
976
Normal
0.0
913
Tumor
0.0
984
Normal
0.0
361
Tumor
0.0
697
Tumor
0.0
137
Tumor
0.0
815
Tumor
0.0
558
Normal
-0.1
955
Tumor
-0.1
528
Normal
-0.1
534
Normal
-0.1
664
Normal
-0.1
564
Normal
-0.1
1031
Tumor
-0.1
983
Tumor
-0.1
446
Normal
-0.1
367
Tumor
-0.1
1025
Tumor
-0.1
494
Normal
-0.1
363
Tumor
-0.1
187
Tumor
-0.1
432
Normal
-0.1
384
Normal
-0.1
572
Normal
-0.1
958
Normal
-0.1
862
Normal
-0.1
188
Normal
-0.1
964
Normal
-0.1
142
Normal
-0.1
1015
Tumor
-0.1
686
Normal
-0.1
393
Tumor
-0.1
978
Normal
-0.1
671
Tumor
-0.1
148
Normal
-0.1
171
Tumor
-0.1
257
Tumor
-0.1
866
Normal
-0.1
478
Normal
-0.1
396
Normal
-0.1
513
Tumor
-0.1
965
Tumor
-0.1
217
Tumor
-0.1
138
Normal
-0.2
456
Normal
-0.2
627
Tumor
-0.2
436
Normal
-0.2
557
Tumor
-0.2
386
Normal
-0.2
212
Normal
-0.2
568
Normal
-0.2
883
Tumor
-0.2
926
Normal
-0.2
312
Normal
-0.2
1021
Tumor
-0.2
722
Normal
-0.2
648
Normal
-0.2
414
Normal
-0.2
685
Tumor
-0.2
546
Normal
-0.2
136
Normal
-0.2
186
Normal
-0.2
1016
Normal
-0.2
394
Normal
-0.2
428
Normal
-0.2
358
Normal
-0.2
484
Normal
-0.2
132
Normal
-0.2
982
Normal
-0.2
452
Normal
-0.2
617
Tumor
-0.2
286
Normal
-0.2
914
Normal
-0.2
918
Normal
-0.2
424
Normal
-0.2
777
Tumor
-0.3
968
Normal
-0.3
922
Normal
-0.3
471
Tumor
-0.3
464
Normal
-0.3
863
Tumor
-0.3
391
Tumor
-0.3
331
Tumor
-0.3
434
Normal
-0.3
944
Normal
-0.3
715
Tumor
-0.3
526
Normal
-0.3
554
Normal
-0.3
524
Normal
-0.3
466
Normal
-0.3
517
Tumor
-0.3
661
Tumor
-0.3
938
Normal
-0.3
482
Normal
-0.3
426
Normal
-0.3
952
Normal
-0.3
527
Tumor
-0.3
462
Normal
-0.3
924
Normal
-0.3
218
Normal
-0.3
332
Normal
-0.3
1028
Normal
-0.3
956
Normal
-0.3
352
Normal
-0.3
696
Normal
-0.4
1032
Normal
-0.4
416
Normal
-0.4
465
Tumor
-0.4
468
Normal
-0.4
966
Normal
-0.4
981
Tumor
-0.4
852
Normal
-0.4
433
Tumor
-0.4
743
Tumor
-0.4
472
Normal
-0.4
714
Normal
-0.4
518
Normal
-0.4
422
Normal
-0.4
271
Tumor
-0.4
1042
Normal
-0.4
362
Normal
-0.4
1044
Normal
-0.4
376
Normal
-0.4
388
Normal
-0.4
514
Normal
-0.4
713
Tumor
-0.4
851
Tumor
-0.4
738
Normal
-0.4
816
Normal
-0.4
535
Tumor
-0.4
227
Tumor
-0.4
628
Normal
-0.4
1022
Normal
-0.4
818
Normal
-0.4
272
Normal
-0.5
366
Normal
-0.5
262
Normal
-0.5
1026
Normal
-0.5
716
Normal
-0.5
353
Tumor
-0.5
813
Tumor
-0.5
481
Tumor
-0.5
786
Normal
-0.5
474
Normal
-0.5
755
Tumor
-0.5
1041
Tumor
-0.5
354
Normal
-0.5
915
Tumor
-0.5
516
Normal
-0.5
724
Normal
-0.5
415
Tumor
-0.5
858
Normal
-0.5
616
Normal
-0.5
451
Tumor
-0.5
328
Normal
-0.5
963
Tumor
-0.5
364
Normal
-0.5
744
Normal
-0.5
258
Normal
-0.5
618
Normal
-0.5
553
Tumor
-0.6
1046
Normal
-0.6
824
Normal
-0.6
261
Tumor
-0.6
314
Normal
-0.6
385
Tumor
-0.6
214
Normal
-0.6
785
Tumor
-0.6
232
Normal
-0.6
728
Normal
-0.6
742
Normal
-0.6
778
Normal
-0.6
298
Normal
-0.6
278
Normal
-0.6
977
Tumor
-0.6
967
Tumor
-0.7
723
Tumor
-0.7
196
Normal
-0.7
911
Tumor
-0.7
756
Normal
-0.7
448
Normal
-0.7
642
Normal
-0.7
222
Normal
-0.7
413
Tumor
-0.7
817
Tumor
-0.7
746
Normal
-0.7
365
Tumor
-0.7
861
Tumor
-0.7
814
Normal
-0.8
412
Normal
-0.8
1045
Tumor
-0.8
285
Tumor
-0.8
721
Tumor
-0.8
951
Tumor
-0.8
698
Normal
-0.9
356
Normal
-0.9
351
Tumor
-1.0
867
Tumor
-1.1
615
Tumor
-1.1
741
Tumor
-3.1
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
