We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM114A2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAM114A2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.1
353
Tumor
0.9
223
Tumor
0.8
1027
Tumor
0.8
861
Tumor
0.7
473
Tumor
0.7
1021
Tumor
0.7
1013
Tumor
0.7
445
Tumor
0.7
523
Tumor
0.6
863
Tumor
0.6
977
Tumor
0.6
351
Tumor
0.5
865
Tumor
0.5
571
Tumor
0.5
261
Tumor
0.5
481
Tumor
0.5
745
Tumor
0.5
713
Tumor
0.4
867
Tumor
0.4
823
Tumor
0.4
1041
Tumor
0.4
135
Tumor
0.4
493
Tumor
0.4
1045
Tumor
0.4
911
Tumor
0.4
563
Tumor
0.4
513
Tumor
0.4
813
Tumor
0.4
1043
Tumor
0.4
431
Tumor
0.4
915
Tumor
0.4
257
Tumor
0.4
557
Tumor
0.4
913
Tumor
0.3
617
Tumor
0.3
697
Tumor
0.3
857
Tumor
0.3
327
Tumor
0.3
533
Tumor
0.3
724
Normal
0.3
685
Tumor
0.3
483
Tumor
0.3
211
Tumor
0.3
567
Tumor
0.3
487
Tumor
0.3
213
Tumor
0.3
873
Tumor
0.3
387
Tumor
0.3
755
Tumor
0.3
383
Tumor
0.3
515
Tumor
0.2
171
Tumor
0.2
471
Tumor
0.2
411
Tumor
0.2
925
Tumor
0.2
191
Tumor
0.2
415
Tumor
0.2
455
Tumor
0.2
536
Normal
0.2
615
Tumor
0.2
923
Tumor
0.2
955
Tumor
0.2
951
Tumor
0.2
1026
Normal
0.2
491
Tumor
0.2
137
Tumor
0.2
814
Normal
0.2
573
Tumor
0.2
695
Tumor
0.2
953
Tumor
0.2
355
Tumor
0.2
721
Tumor
0.2
517
Tumor
0.2
627
Tumor
0.2
877
Tumor
0.2
187
Tumor
0.2
981
Tumor
0.2
147
Tumor
0.2
231
Tumor
0.2
497
Tumor
0.2
498
Normal
0.2
224
Normal
0.2
145
Tumor
0.2
413
Tumor
0.1
665
Tumor
0.1
524
Normal
0.1
123
Tumor
0.1
461
Tumor
0.1
967
Tumor
0.1
494
Normal
0.1
467
Tumor
0.1
864
Normal
0.1
285
Tumor
0.1
883
Tumor
0.1
518
Normal
0.1
492
Normal
0.1
952
Normal
0.1
866
Normal
0.1
728
Normal
0.1
968
Normal
0.1
727
Tumor
0.1
161
Tumor
0.1
868
Normal
0.1
328
Normal
0.1
228
Normal
0.1
715
Tumor
0.1
212
Normal
0.1
311
Tumor
0.1
852
Normal
0.1
1022
Normal
0.1
1031
Tumor
0.1
1032
Normal
0.1
554
Normal
0.1
1042
Normal
0.1
1014
Normal
0.1
361
Tumor
0.1
722
Normal
0.1
435
Tumor
0.1
956
Normal
0.1
514
Normal
0.1
1028
Normal
0.1
884
Normal
0.1
1044
Normal
0.1
944
Normal
0.1
882
Normal
0.1
535
Tumor
0.0
816
Normal
0.0
448
Normal
0.0
357
Tumor
0.0
534
Normal
0.0
963
Tumor
0.0
572
Normal
0.0
818
Normal
0.0
978
Normal
0.0
546
Normal
0.0
1046
Normal
0.0
142
Normal
0.0
416
Normal
0.0
965
Tumor
0.0
364
Normal
0.0
286
Normal
0.0
528
Normal
0.0
862
Normal
0.0
714
Normal
0.0
412
Normal
0.0
966
Normal
0.0
141
Tumor
0.0
484
Normal
0.0
478
Normal
0.0
743
Tumor
0.0
284
Normal
0.0
914
Normal
0.0
558
Normal
0.0
922
Normal
0.0
912
Normal
0.0
918
Normal
0.0
698
Normal
0.0
964
Normal
0.0
746
Normal
0.0
696
Normal
0.0
924
Normal
0.0
525
Tumor
0.0
984
Normal
0.0
227
Tumor
0.0
858
Normal
0.0
958
Normal
0.0
954
Normal
0.0
628
Normal
0.0
138
Normal
0.0
146
Normal
0.0
983
Tumor
0.0
516
Normal
0.0
938
Normal
0.0
368
Normal
0.0
851
Tumor
0.0
283
Tumor
0.0
874
Normal
0.0
756
Normal
0.0
526
Normal
0.0
716
Normal
0.0
488
Normal
0.0
824
Normal
0.0
937
Tumor
0.0
443
Tumor
0.0
723
Tumor
0.0
422
Normal
0.0
468
Normal
0.0
635
Tumor
0.0
232
Normal
0.0
663
Tumor
0.0
472
Normal
-0.1
738
Normal
-0.1
391
Tumor
-0.1
957
Tumor
-0.1
192
Normal
-0.1
354
Normal
-0.1
564
Normal
-0.1
447
Tumor
-0.1
881
Tumor
-0.1
466
Normal
-0.1
786
Normal
-0.1
451
Tumor
-0.1
975
Tumor
-0.1
741
Tumor
-0.1
474
Normal
-0.1
462
Normal
-0.1
538
Normal
-0.1
384
Normal
-0.1
926
Normal
-0.1
363
Tumor
-0.1
785
Tumor
-0.1
217
Tumor
-0.1
916
Normal
-0.1
456
Normal
-0.1
365
Tumor
-0.1
878
Normal
-0.1
362
Normal
-0.1
423
Tumor
-0.1
465
Tumor
-0.1
616
Normal
-0.1
744
Normal
-0.1
195
Tumor
-0.1
482
Normal
-0.1
982
Normal
-0.1
553
Tumor
-0.1
358
Normal
-0.1
737
Tumor
-0.1
568
Normal
-0.1
642
Normal
-0.1
976
Normal
-0.1
537
Tumor
-0.1
132
Normal
-0.1
778
Normal
-0.1
297
Tumor
-0.1
446
Normal
-0.1
777
Tumor
-0.1
136
Normal
-0.1
356
Normal
-0.1
426
Normal
-0.1
386
Normal
-0.1
574
Normal
-0.2
366
Normal
-0.2
1016
Normal
-0.2
188
Normal
-0.2
376
Normal
-0.2
815
Tumor
-0.2
444
Normal
-0.2
268
Normal
-0.2
647
Tumor
-0.2
262
Normal
-0.2
817
Tumor
-0.2
433
Tumor
-0.2
636
Normal
-0.2
395
Tumor
-0.2
672
Normal
-0.2
272
Normal
-0.2
436
Normal
-0.2
686
Normal
-0.2
414
Normal
-0.2
452
Normal
-0.2
267
Tumor
-0.2
258
Normal
-0.2
427
Tumor
-0.2
148
Normal
-0.2
618
Normal
-0.2
218
Normal
-0.2
344
Normal
-0.2
214
Normal
-0.2
477
Tumor
-0.2
428
Normal
-0.2
742
Normal
-0.2
921
Tumor
-0.2
111
Normal
-0.2
1025
Tumor
-0.2
128
Normal
-0.2
648
Normal
-0.2
464
Normal
-0.2
375
Tumor
-0.2
385
Tumor
-0.2
666
Normal
-0.2
392
Normal
-0.2
124
Normal
-0.2
434
Normal
-0.2
943
Tumor
-0.2
396
Normal
-0.3
313
Tumor
-0.3
186
Normal
-0.3
664
Normal
-0.3
312
Normal
-0.3
545
Tumor
-0.3
662
Normal
-0.3
271
Tumor
-0.3
421
Tumor
-0.3
196
Normal
-0.3
424
Normal
-0.3
126
Normal
-0.3
298
Normal
-0.3
131
Tumor
-0.3
388
Normal
-0.3
917
Tumor
-0.3
352
Normal
-0.3
185
Tumor
-0.3
641
Tumor
-0.3
222
Normal
-0.3
112
Tumor
-0.3
114
Normal
-0.3
332
Normal
-0.4
113
Tumor
-0.4
1015
Tumor
-0.4
278
Normal
-0.4
432
Normal
-0.4
277
Tumor
-0.4
127
Tumor
-0.4
162
Normal
-0.4
394
Normal
-0.4
367
Tumor
-0.4
314
Normal
-0.4
463
Tumor
-0.4
172
Normal
-0.5
393
Tumor
-0.5
661
Tumor
-0.5
343
Tumor
-0.5
671
Tumor
-0.5
425
Tumor
-0.5
221
Tumor
-0.5
331
Tumor
-0.6
342
Normal
-0.7
341
Tumor
-0.9
125
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
