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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOP58 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
99.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
85.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
79.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
76.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
71.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
67.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
63.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
61.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
58.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
57.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
52.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
51.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
50.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
49.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
46.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
46.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
46.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
44.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
44.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
44.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
42.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
40.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
38.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
34.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
33.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
32.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
28.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
28.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
26.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
26.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
24.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
22.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
22.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
21.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOP58 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.3
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
176.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
108.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
98.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
86.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
85.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
85.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
81.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
75.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
75.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
69.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
69.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
67.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
65.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
64.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
63.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
61.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
58.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
58.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
58.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
58.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
55.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
52.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
52.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
52.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
51.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
51.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
50.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
50.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
49.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
49.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
48.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
47.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
45.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
44.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
44.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
43.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
43.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
43.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
40.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
40.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
39.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
38.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
38.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
36.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
33.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
31.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
27.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
26.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.2
395
Tumor
0.9
685
Tumor
0.9
557
Tumor
0.9
227
Tumor
0.8
1021
Tumor
0.8
743
Tumor
0.8
517
Tumor
0.8
671
Tumor
0.7
367
Tumor
0.7
131
Tumor
0.7
285
Tumor
0.6
413
Tumor
0.6
661
Tumor
0.6
471
Tumor
0.6
1041
Tumor
0.6
537
Tumor
0.6
881
Tumor
0.6
815
Tumor
0.6
877
Tumor
0.5
951
Tumor
0.5
363
Tumor
0.5
477
Tumor
0.5
483
Tumor
0.5
967
Tumor
0.5
715
Tumor
0.5
112
Tumor
0.5
427
Tumor
0.5
567
Tumor
0.5
185
Tumor
0.5
641
Tumor
0.4
425
Tumor
0.4
1031
Tumor
0.4
817
Tumor
0.4
385
Tumor
0.4
965
Tumor
0.4
271
Tumor
0.4
571
Tumor
0.4
221
Tumor
0.4
421
Tumor
0.4
297
Tumor
0.4
123
Tumor
0.4
925
Tumor
0.4
665
Tumor
0.3
267
Tumor
0.3
127
Tumor
0.3
911
Tumor
0.3
113
Tumor
0.3
391
Tumor
0.3
617
Tumor
0.3
433
Tumor
0.3
217
Tumor
0.3
535
Tumor
0.3
975
Tumor
0.3
883
Tumor
0.3
545
Tumor
0.3
231
Tumor
0.3
455
Tumor
0.3
351
Tumor
0.3
983
Tumor
0.3
563
Tumor
0.3
431
Tumor
0.2
467
Tumor
0.2
191
Tumor
0.2
963
Tumor
0.2
615
Tumor
0.2
573
Tumor
0.2
533
Tumor
0.2
261
Tumor
0.2
171
Tumor
0.2
465
Tumor
0.2
1015
Tumor
0.2
525
Tumor
0.2
445
Tumor
0.2
443
Tumor
0.2
461
Tumor
0.1
635
Tumor
0.1
1025
Tumor
0.1
867
Tumor
0.1
375
Tumor
0.1
497
Tumor
0.1
451
Tumor
0.1
447
Tumor
0.1
865
Tumor
0.1
387
Tumor
0.1
135
Tumor
0.1
213
Tumor
0.1
195
Tumor
0.1
383
Tumor
0.1
223
Tumor
0.1
724
Normal
0.1
977
Tumor
0.1
211
Tumor
0.1
343
Tumor
0.1
357
Tumor
0.1
423
Tumor
0.1
697
Tumor
0.1
192
Normal
0.1
917
Tumor
0.1
444
Normal
0.0
663
Tumor
0.0
353
Tumor
0.0
493
Tumor
0.0
813
Tumor
0.0
814
Normal
0.0
344
Normal
0.0
921
Tumor
0.0
415
Tumor
0.0
187
Tumor
0.0
278
Normal
0.0
396
Normal
0.0
384
Normal
0.0
913
Tumor
0.0
298
Normal
0.0
314
Normal
0.0
393
Tumor
0.0
332
Normal
0.0
741
Tumor
0.0
744
Normal
0.0
823
Tumor
-0.1
435
Tumor
-0.1
277
Tumor
-0.1
361
Tumor
-0.1
463
Tumor
-0.1
727
Tumor
-0.1
394
Normal
-0.1
466
Normal
-0.1
268
Normal
-0.1
327
Tumor
-0.1
628
Normal
-0.1
686
Normal
-0.1
695
Tumor
-0.1
446
Normal
-0.1
878
Normal
-0.1
912
Normal
-0.1
662
Normal
-0.1
636
Normal
-0.1
342
Normal
-0.1
572
Normal
-0.1
311
Tumor
-0.1
196
Normal
-0.1
434
Normal
-0.1
666
Normal
-0.1
574
Normal
-0.1
824
Normal
-0.1
882
Normal
-0.1
564
Normal
-0.1
283
Tumor
-0.1
618
Normal
-0.1
553
Tumor
-0.1
232
Normal
-0.1
1045
Tumor
-0.1
137
Tumor
-0.1
627
Tumor
-0.1
664
Normal
-0.1
647
Tumor
-0.1
257
Tumor
-0.1
388
Normal
-0.1
616
Normal
-0.1
352
Normal
-0.1
698
Normal
-0.1
222
Normal
-0.1
214
Normal
-0.1
355
Tumor
-0.1
984
Normal
-0.1
356
Normal
-0.1
713
Tumor
-0.1
272
Normal
-0.1
148
Normal
-0.1
162
Normal
-0.1
412
Normal
-0.1
228
Normal
-0.1
1027
Tumor
-0.1
354
Normal
-0.1
188
Normal
-0.1
558
Normal
-0.1
452
Normal
-0.2
861
Tumor
-0.2
376
Normal
-0.2
368
Normal
-0.2
536
Normal
-0.2
873
Tumor
-0.2
937
Tumor
-0.2
714
Normal
-0.2
863
Tumor
-0.2
538
Normal
-0.2
432
Normal
-0.2
478
Normal
-0.2
672
Normal
-0.2
284
Normal
-0.2
721
Tumor
-0.2
858
Normal
-0.2
312
Normal
-0.2
462
Normal
-0.2
161
Tumor
-0.2
386
Normal
-0.2
737
Tumor
-0.2
172
Normal
-0.2
851
Tumor
-0.2
1032
Normal
-0.2
954
Normal
-0.2
648
Normal
-0.2
976
Normal
-0.2
365
Tumor
-0.2
964
Normal
-0.2
111
Normal
-0.2
313
Tumor
-0.2
142
Normal
-0.2
114
Normal
-0.2
818
Normal
-0.2
738
Normal
-0.2
488
Normal
-0.2
1046
Normal
-0.2
642
Normal
-0.2
145
Tumor
-0.2
262
Normal
-0.2
392
Normal
-0.2
1026
Normal
-0.2
1028
Normal
-0.2
358
Normal
-0.2
1014
Normal
-0.2
513
Tumor
-0.2
857
Tumor
-0.2
218
Normal
-0.2
534
Normal
-0.2
786
Normal
-0.2
943
Tumor
-0.2
146
Normal
-0.2
132
Normal
-0.2
366
Normal
-0.2
464
Normal
-0.3
436
Normal
-0.3
126
Normal
-0.3
958
Normal
-0.3
524
Normal
-0.3
515
Tumor
-0.3
864
Normal
-0.3
1042
Normal
-0.3
414
Normal
-0.3
816
Normal
-0.3
938
Normal
-0.3
411
Tumor
-0.3
448
Normal
-0.3
914
Normal
-0.3
224
Normal
-0.3
138
Normal
-0.3
968
Normal
-0.3
424
Normal
-0.3
915
Tumor
-0.3
186
Normal
-0.3
852
Normal
-0.3
426
Normal
-0.3
1022
Normal
-0.3
328
Normal
-0.3
498
Normal
-0.3
258
Normal
-0.3
866
Normal
-0.3
124
Normal
-0.3
362
Normal
-0.3
722
Normal
-0.3
428
Normal
-0.3
136
Normal
-0.3
966
Normal
-0.3
981
Tumor
-0.3
957
Tumor
-0.3
696
Normal
-0.3
487
Tumor
-0.3
456
Normal
-0.3
341
Tumor
-0.3
212
Normal
-0.3
472
Normal
-0.3
955
Tumor
-0.3
528
Normal
-0.3
1016
Normal
-0.3
468
Normal
-0.3
884
Normal
-0.3
492
Normal
-0.3
128
Normal
-0.3
422
Normal
-0.3
1044
Normal
-0.3
474
Normal
-0.3
494
Normal
-0.3
568
Normal
-0.3
286
Normal
-0.3
546
Normal
-0.3
364
Normal
-0.3
518
Normal
-0.3
742
Normal
-0.4
473
Tumor
-0.4
141
Tumor
-0.4
982
Normal
-0.4
482
Normal
-0.4
956
Normal
-0.4
916
Normal
-0.4
785
Tumor
-0.4
923
Tumor
-0.4
484
Normal
-0.4
481
Tumor
-0.4
416
Normal
-0.4
922
Normal
-0.4
523
Tumor
-0.4
862
Normal
-0.4
716
Normal
-0.4
125
Tumor
-0.4
723
Tumor
-0.4
527
Tumor
-0.4
526
Normal
-0.4
728
Normal
-0.4
952
Normal
-0.4
874
Normal
-0.4
514
Normal
-0.4
746
Normal
-0.4
918
Normal
-0.4
953
Tumor
-0.4
944
Normal
-0.4
924
Normal
-0.4
516
Normal
-0.5
926
Normal
-0.5
778
Normal
-0.5
978
Normal
-0.5
1013
Tumor
-0.5
868
Normal
-0.5
745
Tumor
-0.5
756
Normal
-0.5
777
Tumor
-0.5
147
Tumor
-0.5
554
Normal
-0.5
755
Tumor
-0.5
1043
Tumor
-0.6
491
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
