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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HEBP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
101.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
79.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
77.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
71.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
68.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
67.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
66.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
66.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
64.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
63.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
62.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
62.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
62.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
61.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
60.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
60.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
60.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
59.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
56.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
56.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
55.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
54.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
54.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
54.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
54.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
54.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
53.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
53.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
52.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
49.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
49.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
48.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
47.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
46.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
46.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
46.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
45.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
45.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
45.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
44.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
44.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
42.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
42.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
42.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
42.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
39.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
37.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
36.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
36.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
36.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
33.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
31.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
31.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
30.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
30.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
29.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
28.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
27.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
16.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HEBP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.4
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
157.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
138.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
135.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
132.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
124.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
123.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
119.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
112.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
112.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
111.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
111.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
107.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
106.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
105.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
104.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
100.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
97.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
94.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
91.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
90.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
88.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
87.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
87.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
85.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
82.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
81.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
80.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
79.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
77.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
76.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
75.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
74.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
74.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
72.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
71.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
70.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
70.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
70.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
69.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
69.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
69.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
68.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
68.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
67.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
66.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
66.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
66.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
65.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
65.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
65.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
65.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
65.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
64.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
63.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
63.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
62.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
62.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
61.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
60.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
60.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
59.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
58.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
58.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
58.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
56.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
54.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
54.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
54.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
53.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
52.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
51.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
51.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
51.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
50.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
49.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
49.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
49.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
47.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
47.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
46.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
45.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
44.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
43.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
43.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
43.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
43.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
42.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
41.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
39.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
38.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
33.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
33.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
32.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
32.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
31.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
30.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.1
515
Tumor
0.9
431
Tumor
0.9
425
Tumor
0.9
484
Normal
0.8
785
Tumor
0.8
858
Normal
0.7
818
Normal
0.7
944
Normal
0.7
1046
Normal
0.7
698
Normal
0.7
912
Normal
0.7
955
Tumor
0.6
984
Normal
0.6
878
Normal
0.6
938
Normal
0.6
1026
Normal
0.6
482
Normal
0.6
488
Normal
0.6
663
Tumor
0.6
737
Tumor
0.6
921
Tumor
0.6
271
Tumor
0.6
862
Normal
0.6
487
Tumor
0.6
882
Normal
0.6
462
Normal
0.6
824
Normal
0.6
728
Normal
0.5
123
Tumor
0.5
954
Normal
0.5
911
Tumor
0.5
742
Normal
0.5
863
Tumor
0.5
756
Normal
0.5
327
Tumor
0.5
221
Tumor
0.5
448
Normal
0.5
471
Tumor
0.5
472
Normal
0.5
147
Tumor
0.5
528
Normal
0.5
534
Normal
0.5
786
Normal
0.5
1022
Normal
0.5
714
Normal
0.5
958
Normal
0.5
744
Normal
0.5
356
Normal
0.4
884
Normal
0.4
494
Normal
0.4
131
Tumor
0.4
864
Normal
0.4
964
Normal
0.4
364
Normal
0.4
514
Normal
0.4
738
Normal
0.4
478
Normal
0.4
741
Tumor
0.4
1021
Tumor
0.4
1016
Normal
0.4
866
Normal
0.4
546
Normal
0.4
186
Normal
0.4
1044
Normal
0.4
918
Normal
0.4
926
Normal
0.4
222
Normal
0.4
518
Normal
0.4
228
Normal
0.4
1014
Normal
0.4
868
Normal
0.4
342
Normal
0.4
1042
Normal
0.4
426
Normal
0.4
922
Normal
0.4
778
Normal
0.4
1028
Normal
0.4
982
Normal
0.4
328
Normal
0.3
1032
Normal
0.3
527
Tumor
0.3
924
Normal
0.3
415
Tumor
0.3
332
Normal
0.3
212
Normal
0.3
416
Normal
0.3
474
Normal
0.3
716
Normal
0.3
568
Normal
0.3
298
Normal
0.3
923
Tumor
0.3
976
Normal
0.3
956
Normal
0.3
128
Normal
0.3
196
Normal
0.3
617
Tumor
0.3
636
Normal
0.3
746
Normal
0.3
1043
Tumor
0.3
664
Normal
0.3
618
Normal
0.3
432
Normal
0.2
616
Normal
0.2
966
Normal
0.2
148
Normal
0.2
696
Normal
0.2
526
Normal
0.2
852
Normal
0.2
376
Normal
0.2
137
Tumor
0.2
344
Normal
0.2
394
Normal
0.2
414
Normal
0.2
483
Tumor
0.2
628
Normal
0.2
977
Tumor
0.2
874
Normal
0.2
473
Tumor
0.2
477
Tumor
0.2
816
Normal
0.2
952
Normal
0.2
172
Normal
0.2
572
Normal
0.2
358
Normal
0.2
648
Normal
0.2
672
Normal
0.2
745
Tumor
0.2
446
Normal
0.2
723
Tumor
0.2
436
Normal
0.2
915
Tumor
0.2
564
Normal
0.2
353
Tumor
0.2
516
Normal
0.2
456
Normal
0.2
286
Normal
0.2
424
Normal
0.2
538
Normal
0.1
464
Normal
0.1
284
Normal
0.1
666
Normal
0.1
497
Tumor
0.1
162
Normal
0.1
466
Normal
0.1
554
Normal
0.1
968
Normal
0.1
558
Normal
0.1
428
Normal
0.1
132
Normal
0.1
314
Normal
0.1
412
Normal
0.1
525
Tumor
0.1
978
Normal
0.1
524
Normal
0.1
1013
Tumor
0.1
867
Tumor
0.1
498
Normal
0.1
916
Normal
0.1
523
Tumor
0.1
354
Normal
0.1
443
Tumor
0.1
278
Normal
0.1
111
Normal
0.1
232
Normal
0.1
396
Normal
0.1
258
Normal
0.1
445
Tumor
0.1
136
Normal
0.1
963
Tumor
0.1
388
Normal
0.1
574
Normal
0.1
975
Tumor
0.1
662
Normal
0.1
452
Normal
0.1
686
Normal
0.1
422
Normal
0.1
142
Normal
0.1
553
Tumor
0.0
392
Normal
0.0
635
Tumor
0.0
697
Tumor
0.0
873
Tumor
0.0
642
Normal
0.0
352
Normal
0.0
135
Tumor
0.0
492
Normal
0.0
368
Normal
0.0
1027
Tumor
0.0
114
Normal
0.0
513
Tumor
0.0
224
Normal
0.0
1031
Tumor
0.0
881
Tumor
0.0
914
Normal
0.0
695
Tumor
0.0
627
Tumor
0.0
361
Tumor
0.0
386
Normal
0.0
366
Normal
0.0
218
Normal
0.0
312
Normal
-0.1
362
Normal
-0.1
383
Tumor
-0.1
861
Tumor
-0.1
272
Normal
-0.1
647
Tumor
-0.1
365
Tumor
-0.1
865
Tumor
-0.1
981
Tumor
-0.1
468
Normal
-0.1
857
Tumor
-0.1
823
Tumor
-0.1
384
Normal
-0.1
536
Normal
-0.1
491
Tumor
-0.1
214
Normal
-0.1
615
Tumor
-0.1
124
Normal
-0.1
447
Tumor
-0.1
481
Tumor
-0.1
461
Tumor
-0.1
563
Tumor
-0.1
444
Normal
-0.1
455
Tumor
-0.2
262
Normal
-0.2
883
Tumor
-0.2
943
Tumor
-0.2
138
Normal
-0.2
268
Normal
-0.2
641
Tumor
-0.2
953
Tumor
-0.2
571
Tumor
-0.2
817
Tumor
-0.3
355
Tumor
-0.3
533
Tumor
-0.3
755
Tumor
-0.3
217
Tumor
-0.3
185
Tumor
-0.3
126
Normal
-0.3
192
Normal
-0.3
261
Tumor
-0.3
341
Tumor
-0.3
1045
Tumor
-0.3
1015
Tumor
-0.3
722
Normal
-0.3
285
Tumor
-0.3
925
Tumor
-0.3
223
Tumor
-0.3
917
Tumor
-0.3
277
Tumor
-0.3
434
Normal
-0.3
983
Tumor
-0.4
387
Tumor
-0.4
423
Tumor
-0.4
937
Tumor
-0.4
815
Tumor
-0.4
188
Normal
-0.4
125
Tumor
-0.4
957
Tumor
-0.4
313
Tumor
-0.4
813
Tumor
-0.4
465
Tumor
-0.4
435
Tumor
-0.5
112
Tumor
-0.5
1025
Tumor
-0.5
814
Normal
-0.5
267
Tumor
-0.5
517
Tumor
-0.5
421
Tumor
-0.5
463
Tumor
-0.5
433
Tumor
-0.5
127
Tumor
-0.5
427
Tumor
-0.5
141
Tumor
-0.6
231
Tumor
-0.6
913
Tumor
-0.6
146
Normal
-0.6
311
Tumor
-0.6
367
Tumor
-0.6
297
Tumor
-0.6
967
Tumor
-0.6
227
Tumor
-0.6
665
Tumor
-0.6
545
Tumor
-0.6
1041
Tumor
-0.6
493
Tumor
-0.6
283
Tumor
-0.7
357
Tumor
-0.7
685
Tumor
-0.7
537
Tumor
-0.7
451
Tumor
-0.7
331
Tumor
-0.7
851
Tumor
-0.7
661
Tumor
-0.7
951
Tumor
-0.7
721
Tumor
-0.7
395
Tumor
-0.8
211
Tumor
-0.8
191
Tumor
-0.8
195
Tumor
-0.8
343
Tumor
-0.8
161
Tumor
-0.8
713
Tumor
-0.8
965
Tumor
-0.9
257
Tumor
-0.9
411
Tumor
-0.9
187
Tumor
-0.9
363
Tumor
-0.9
573
Tumor
-0.9
113
Tumor
-1.0
213
Tumor
-1.0
724
Normal
-1.0
567
Tumor
-1.0
145
Tumor
-1.0
671
Tumor
-1.0
393
Tumor
-1.1
727
Tumor
-1.1
715
Tumor
-1.1
743
Tumor
-1.1
375
Tumor
-1.1
877
Tumor
-1.1
535
Tumor
-1.1
557
Tumor
-1.2
413
Tumor
-1.2
391
Tumor
-1.2
171
Tumor
-1.2
385
Tumor
-1.3
351
Tumor
-1.4
467
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
