MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.1 nTPM
HPA Brain:54.4 nTPM
GTEx:59.1 nTPM
FANTOM5:45.4 Scaled Tags Per Million
Pig:69.6 nTPM
Mouse:4.0 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.2
2586 Male, age 75, left hemisphere 61.5
2828 Female, age 72, unknown 55.2
1870 Female, age 42, unknown 53.2
1830 Male, age 51, unknown 52.5
2019 Male, age 18, unknown 47.9
2666 Male, age 74, left hemisphere 46.6
1833 Male, age 53, unknown 45.7
2411 Female, age 72, unknown 39.7
1827 Male, age 72, unknown 36.7
2219 Male, age 76, both hemispheres 33.0
Dorsal raphe nucleus
nTPM: 41.0
2016 Female, age 72, unknown 49.2
2750 Male, age 76, both hemispheres 44.3
1828 Male, age 53, unknown 43.1
2047 Male, age 72, unknown 36.9
2298 Female, age 72, unknown 31.6
Inferior colliculus
nTPM: 39.1
1890 Male, age 53, unknown 46.3
2849 Male, age 72, unknown 41.8
1848 Female, age 42, unknown 40.6
2097 Female, age 72, unknown 27.7
Median raphe nucleus
nTPM: 34.5
2220 Male, age 76, midline 34.5
Periaquaductal grey, anterior
nTPM: 36.0
2502 Female, age 75, unknown 40.8
1795 Male, age 51, unknown 36.1
1947 Male, age 18, unknown 31.2
Periaquaductal grey, dorsal
nTPM: 36.1
2464 Female, age 72, unknown 39.3
1831 Male, age 72, unknown 38.2
2850 Male, age 76, both hemispheres 36.1
1840 Male, age 53, unknown 31.0
Periaquaductal grey, lateral
nTPM: 37.2
2053 Male, age 18, unknown 40.7
2140 Male, age 76, both hemispheres 35.8
2272 Male, age 74, both hemispheres 35.0
Pretectal area
nTPM: 34.7
2407 Male, age 75, both hemispheres 39.2
1815 Male, age 53, unknown 39.0
2316 Male, age 76, right hemisphere 38.8
2825 Male, age 18, unknown 38.7
2667 Female, age 75, unknown 37.6
2273 Male, age 74, both hemispheres 37.4
1817 Female, age 42, unknown 35.0
2007 Male, age 72, unknown 32.3
2224 Female, age 72, unknown 30.4
1944 Female, age 72, unknown 28.8
1816 Male, age 51, unknown 24.1
Red nucleus
nTPM: 54.4
2769 Male, age 72, unknown 62.5
2227 Male, age 72, unknown 62.0
1865 Male, age 51, unknown 60.4
1904 Male, age 53, unknown 59.1
2503 Female, age 72, unknown 55.9
1954 Female, age 42, unknown 55.8
2823 Male, age 76, right hemisphere 54.3
1821 Female, age 72, unknown 52.5
2584 Male, age 75, left hemisphere 51.9
2785 Male, age 18, unknown 50.3
2725 Female, age 75, unknown 44.6
2588 Male, age 74, left hemisphere 43.3
Substantia nigra
nTPM: 38.5
2699 Male, age 18, unknown 50.8
2583 Male, age 75, right hemisphere 49.3
1851 Male, age 51, unknown 42.9
2409 Female, age 72, unknown 42.2
1889 Female, age 72, unknown 36.9
2665 Male, age 74, both hemispheres 36.7
2590 Female, age 75, unknown 36.3
1916 Female, age 42, unknown 36.0
1941 Male, age 53, unknown 28.0
2241 Male, age 72, unknown 26.2
Superior colliculus
nTPM: 41.9
1995 Male, age 72, unknown 56.5
1913 Female, age 42, unknown 56.2
2664 Male, age 75, both hemispheres 51.7
2668 Female, age 75, unknown 41.2
1839 Male, age 51, unknown 40.7
2587 Male, age 74, left hemisphere 40.5
1796 Male, age 53, unknown 40.4
2087 Female, age 72, unknown 31.1
1895 Male, age 76, right hemisphere 31.0
2261 Male, age 18, unknown 29.3
Ventral tegmental area
nTPM: 43.3
2223 Female, age 72, unknown 56.8
2021 Male, age 53, unknown 43.0
1915 Female, age 42, unknown 42.6
1942 Male, age 51, unknown 41.9
2410 Female, age 72, unknown 41.8
2218 Male, age 76, both hemispheres 33.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 59.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.1
Samples: 139

Max nTPM: 149.6
Min nTPM: 18.1
Std nTPM: 19.9
Median nTPM: 56.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 149.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 114.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 112.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 110.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 103.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 102.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 96.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 93.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 92.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 92.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.4
FF:10158-103A5 76 years, female 45.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 69.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.0
Samples: 4

Max nTPM: 71.2
Min nTPM: 57.6
Sample A Female 71.0
Sample B Female 57.6
Sample C Male 68.0
Sample D Male 71.2
Midbrain
nTPM: 69.0
Samples: 4

Max nTPM: 132.8
Min nTPM: 34.3
Sample A Female 132.8
Sample B Female 65.4
Sample C Male 43.6
Sample D Male 34.3
Periaqueductal gray
nTPM: 69.6
Samples: 3

Max nTPM: 81.3
Min nTPM: 63.7
Sample B Female 63.7
Sample C Male 81.3
Sample D Male 63.7
Superior colliculi
nTPM: 47.1
Samples: 4

Max nTPM: 52.2
Min nTPM: 40.9
Sample A Female 52.2
Sample B Female 40.9
Sample C Male 45.8
Sample D Male 49.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.4
Sample A Male 5.1
Sample B Male 3.9
Sample C Female 3.9
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
356087 Antisense, RP_040617_02_C03, Mouse strain C57BL/6J (56 days, male) 5.1
71608386 Antisense, RP_050927_01_F03, Mouse strain C57BL/6J (56 days, male) 0.8

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