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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
81.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
73.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
67.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
56.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
52.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
49.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
44.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
40.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
36.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
35.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
34.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
30.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
24.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
35.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.5
957
Tumor
1.4
411
Tumor
1.4
497
Tumor
1.3
313
Tumor
1.3
965
Tumor
1.3
351
Tumor
1.2
743
Tumor
1.2
355
Tumor
1.1
865
Tumor
1.0
391
Tumor
1.0
695
Tumor
1.0
921
Tumor
1.0
877
Tumor
0.9
983
Tumor
0.9
277
Tumor
0.9
413
Tumor
0.9
523
Tumor
0.9
161
Tumor
0.8
1013
Tumor
0.8
571
Tumor
0.8
923
Tumor
0.8
285
Tumor
0.8
463
Tumor
0.8
211
Tumor
0.8
357
Tumor
0.7
727
Tumor
0.7
131
Tumor
0.6
951
Tumor
0.6
375
Tumor
0.6
537
Tumor
0.6
517
Tumor
0.6
367
Tumor
0.6
112
Tumor
0.6
943
Tumor
0.6
427
Tumor
0.6
953
Tumor
0.6
487
Tumor
0.5
813
Tumor
0.5
473
Tumor
0.5
443
Tumor
0.5
467
Tumor
0.5
343
Tumor
0.5
545
Tumor
0.5
661
Tumor
0.5
663
Tumor
0.5
737
Tumor
0.5
425
Tumor
0.5
477
Tumor
0.5
535
Tumor
0.5
671
Tumor
0.5
471
Tumor
0.4
385
Tumor
0.4
1031
Tumor
0.4
724
Normal
0.4
431
Tumor
0.4
1021
Tumor
0.4
231
Tumor
0.4
641
Tumor
0.4
341
Tumor
0.4
493
Tumor
0.4
283
Tumor
0.4
527
Tumor
0.3
491
Tumor
0.3
465
Tumor
0.3
393
Tumor
0.3
127
Tumor
0.3
387
Tumor
0.3
125
Tumor
0.3
815
Tumor
0.3
331
Tumor
0.3
665
Tumor
0.3
647
Tumor
0.3
445
Tumor
0.3
123
Tumor
0.3
135
Tumor
0.3
297
Tumor
0.3
1025
Tumor
0.3
533
Tumor
0.3
433
Tumor
0.2
267
Tumor
0.2
567
Tumor
0.2
713
Tumor
0.2
141
Tumor
0.2
227
Tumor
0.2
977
Tumor
0.2
363
Tumor
0.2
814
Normal
0.2
271
Tumor
0.2
213
Tumor
0.2
361
Tumor
0.2
383
Tumor
0.2
697
Tumor
0.2
171
Tumor
0.2
553
Tumor
0.2
187
Tumor
0.2
635
Tumor
0.2
745
Tumor
0.2
715
Tumor
0.1
873
Tumor
0.1
817
Tumor
0.1
257
Tumor
0.1
937
Tumor
0.1
573
Tumor
0.1
1043
Tumor
0.1
221
Tumor
0.1
423
Tumor
0.1
883
Tumor
0.1
435
Tumor
0.0
455
Tumor
0.0
447
Tumor
0.0
755
Tumor
0.0
1045
Tumor
0.0
881
Tumor
0.0
975
Tumor
0.0
563
Tumor
0.0
1027
Tumor
0.0
925
Tumor
0.0
513
Tumor
0.0
685
Tumor
0.0
741
Tumor
0.0
525
Tumor
0.0
147
Tumor
0.0
483
Tumor
0.0
314
Normal
-0.1
332
Normal
-0.1
451
Tumor
-0.1
395
Tumor
-0.1
963
Tumor
-0.1
298
Normal
-0.1
191
Tumor
-0.1
966
Normal
-0.1
421
Tumor
-0.1
145
Tumor
-0.1
311
Tumor
-0.2
958
Normal
-0.2
777
Tumor
-0.2
278
Normal
-0.2
365
Tumor
-0.2
482
Normal
-0.2
261
Tumor
-0.2
546
Normal
-0.2
223
Tumor
-0.2
1041
Tumor
-0.2
851
Tumor
-0.2
863
Tumor
-0.2
534
Normal
-0.2
185
Tumor
-0.2
964
Normal
-0.2
615
Tumor
-0.2
823
Tumor
-0.2
557
Tumor
-0.2
217
Tumor
-0.2
976
Normal
-0.2
415
Tumor
-0.2
148
Normal
-0.3
488
Normal
-0.3
978
Normal
-0.3
857
Tumor
-0.3
498
Normal
-0.3
434
Normal
-0.3
861
Tumor
-0.3
188
Normal
-0.3
984
Normal
-0.3
515
Tumor
-0.3
492
Normal
-0.3
554
Normal
-0.3
113
Tumor
-0.3
528
Normal
-0.3
364
Normal
-0.3
915
Tumor
-0.3
452
Normal
-0.3
468
Normal
-0.3
354
Normal
-0.3
968
Normal
-0.3
388
Normal
-0.3
162
Normal
-0.3
464
Normal
-0.3
353
Tumor
-0.3
416
Normal
-0.3
481
Tumor
-0.3
494
Normal
-0.3
137
Tumor
-0.3
1015
Tumor
-0.3
867
Tumor
-0.3
328
Normal
-0.3
352
Normal
-0.4
944
Normal
-0.4
312
Normal
-0.4
538
Normal
-0.4
913
Tumor
-0.4
386
Normal
-0.4
461
Tumor
-0.4
195
Tumor
-0.4
938
Normal
-0.4
172
Normal
-0.4
1014
Normal
-0.4
917
Tumor
-0.4
911
Tumor
-0.4
617
Tumor
-0.4
981
Tumor
-0.4
376
Normal
-0.4
444
Normal
-0.4
362
Normal
-0.4
484
Normal
-0.4
432
Normal
-0.4
818
Normal
-0.4
466
Normal
-0.4
384
Normal
-0.4
954
Normal
-0.4
232
Normal
-0.4
394
Normal
-0.4
284
Normal
-0.4
636
Normal
-0.4
662
Normal
-0.4
286
Normal
-0.4
344
Normal
-0.4
262
Normal
-0.4
536
Normal
-0.4
412
Normal
-0.4
366
Normal
-0.4
192
Normal
-0.4
186
Normal
-0.4
258
Normal
-0.4
868
Normal
-0.4
368
Normal
-0.4
785
Tumor
-0.4
356
Normal
-0.4
474
Normal
-0.4
924
Normal
-0.4
627
Tumor
-0.4
446
Normal
-0.4
456
Normal
-0.4
272
Normal
-0.4
462
Normal
-0.4
852
Normal
-0.4
874
Normal
-0.4
358
Normal
-0.4
574
Normal
-0.4
721
Tumor
-0.4
146
Normal
-0.5
916
Normal
-0.5
396
Normal
-0.5
478
Normal
-0.5
926
Normal
-0.5
956
Normal
-0.5
516
Normal
-0.5
616
Normal
-0.5
138
Normal
-0.5
132
Normal
-0.5
392
Normal
-0.5
664
Normal
-0.5
428
Normal
-0.5
436
Normal
-0.5
142
Normal
-0.5
572
Normal
-0.5
866
Normal
-0.5
858
Normal
-0.5
342
Normal
-0.5
1016
Normal
-0.5
268
Normal
-0.5
955
Tumor
-0.5
472
Normal
-0.5
672
Normal
-0.5
128
Normal
-0.5
648
Normal
-0.5
568
Normal
-0.5
564
Normal
-0.5
628
Normal
-0.5
426
Normal
-0.5
526
Normal
-0.5
723
Tumor
-0.5
686
Normal
-0.5
642
Normal
-0.5
136
Normal
-0.5
728
Normal
-0.5
862
Normal
-0.5
816
Normal
-0.5
214
Normal
-0.5
952
Normal
-0.5
422
Normal
-0.5
722
Normal
-0.5
982
Normal
-0.6
738
Normal
-0.6
424
Normal
-0.6
228
Normal
-0.6
618
Normal
-0.6
196
Normal
-0.6
212
Normal
-0.6
518
Normal
-0.6
744
Normal
-0.6
864
Normal
-0.6
126
Normal
-0.6
742
Normal
-0.6
327
Tumor
-0.6
224
Normal
-0.6
558
Normal
-0.6
666
Normal
-0.6
698
Normal
-0.6
1032
Normal
-0.6
922
Normal
-0.6
524
Normal
-0.6
696
Normal
-0.6
878
Normal
-0.6
1044
Normal
-0.6
448
Normal
-0.6
918
Normal
-0.6
414
Normal
-0.6
824
Normal
-0.6
218
Normal
-0.6
124
Normal
-0.6
882
Normal
-0.7
114
Normal
-0.7
222
Normal
-0.7
1042
Normal
-0.7
914
Normal
-0.7
1028
Normal
-0.7
884
Normal
-0.7
756
Normal
-0.7
1026
Normal
-0.7
514
Normal
-0.7
912
Normal
-0.7
1022
Normal
-0.7
746
Normal
-0.7
716
Normal
-0.7
714
Normal
-0.8
778
Normal
-0.8
111
Normal
-0.8
1046
Normal
-0.9
786
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
