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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
237.5
nTPM
FANTOM5:
9.1
Scaled Tags Per Million
Pig:
4.3
nTPM
Allen mouse:
1.0
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
237.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 200.4
2301
Female, age 85, both hemispheres
240.5
2188
Female, age 91, both hemispheres
233.9
2090
Male, age 80, both hemispheres
231.3
1984
Male, age 76, both hemispheres
95.9
Dorsal cochlear nucleus nTPM: 171.3
2378
Male, age 80, both hemispheres
218.8
2802
Male, age 74, right hemisphere
192.4
2370
Male, age 61, both hemispheres
173.4
2187
Female, age 91, both hemispheres
161.9
2058
Male, age 76, both hemispheres
110.1
Dorsal tegmental nucleus nTPM: 173.1
2083
Male, age 80, both hemispheres
213.4
2358
Male, age 61, both hemispheres
203.2
2326
Male, age 74, both hemispheres
152.8
1936
Male, age 76, left hemisphere
122.9
Dorsolateral tegmental area nTPM: 179.8
2654
Male, age 80, both hemispheres
243.8
2751
Female, age 85, both hemispheres
228.2
2337
Male, age 61, both hemispheres
200.7
2141
Male, age 76, both hemispheres
126.0
2360
Male, age 74, both hemispheres
100.2
Kolliker-Fuse nucleus nTPM: 185.3
2793
Female, age 91, left hemisphere
285.9
2163
Male, age 80, both hemispheres
177.2
2315
Male, age 76, right hemisphere
92.7
Lateral lemniscal nuclei nTPM: 212.4
2320
Female, age 91, left hemisphere
283.1
2036
Male, age 80, both hemispheres
208.3
2746
Female, age 85, left hemisphere
203.6
2453
Male, age 74, right hemisphere
199.1
2169
Male, age 76, both hemispheres
167.7
Lateral parabrachial nucleus nTPM: 186.4
2792
Male, age 76, both hemispheres
261.5
2013
Male, age 80, both hemispheres
202.3
2790
Male, age 61, both hemispheres
146.5
2139
Female, age 85, right hemisphere
135.5
Lateral vestibular nucleus nTPM: 200.4
2184
Male, age 76, both hemispheres
229.2
2311
Male, age 80, both hemispheres
171.7
Locus coeruleus nTPM: 81.4
2720
Male, age 74, both hemispheres
116.8
2162
Male, age 80, both hemispheres
94.3
2123
Female, age 91, both hemispheres
79.3
2317
Female, age 72, unknown
78.5
2788
Male, age 74, unknown
70.3
1980
Male, age 76, both hemispheres
65.5
2014
Male, age 55, unknown
65.0
Medial parabrachial nucleus nTPM: 190.1
2786
Male, age 76, both hemispheres
242.7
2156
Male, age 61, both hemispheres
198.4
2854
Male, age 80, both hemispheres
184.3
2170
Female, age 91, both hemispheres
166.4
2463
Female, age 85, right hemisphere
158.7
Medial periolivary nuclei nTPM: 192.0
2081
Male, age 80, both hemispheres
319.4
2458
Female, age 91, both hemispheres
267.8
2171
Female, age 85, both hemispheres
152.0
2791
Male, age 74, right hemisphere
140.6
2063
Male, age 76, both hemispheres
80.1
Motor facial nucleus nTPM: 182.8
2697
Female, age 85, both hemispheres
301.9
2126
Male, age 61, both hemispheres
213.5
2795
Female, age 91, both hemispheres
182.1
2327
Male, age 80, both hemispheres
175.5
2365
Male, age 74, right hemisphere
146.3
2062
Male, age 76, both hemispheres
77.3
Motor trigeminal nucleus nTPM: 210.1
2309
Male, age 76, both hemispheres
251.8
2321
Female, age 91, both hemispheres
240.9
2560
Male, age 74, both hemispheres
196.7
2079
Male, age 80, both hemispheres
189.4
2335
Male, age 61, both hemispheres
171.7
Nuclei of the trapezoid body nTPM: 150.1
2166
Male, age 80, both hemispheres
248.2
2159
Male, age 61, both hemispheres
175.7
2368
Female, age 91, both hemispheres
167.2
1983
Male, age 76, both hemispheres
79.6
2735
Female, age 85, both hemispheres
79.6
Nucleus raphe magnus nTPM: 152.3
2459
Female, age 91, both hemispheres
251.3
2328
Male, age 80, both hemispheres
202.6
2051
Male, age 76, both hemispheres
183.9
2455
Male, age 74, both hemispheres
132.7
2172
Female, age 85, both hemispheres
87.1
2160
Male, age 61, both hemispheres
56.1
Paramedian reticular nucleus nTPM: 180.8
2052
Male, age 76, both hemispheres
265.6
2057
Male, age 80, both hemispheres
192.8
2050
Female, age 85, both hemispheres
177.8
2313
Male, age 61, both hemispheres
87.0
Pedunculopontine tegmental nucleus nTPM: 156.8
2338
Male, age 61, both hemispheres
228.4
2334
Male, age 80, both hemispheres
149.5
1921
Female, age 85, both hemispheres
92.4
Pontine nuclei nTPM: 190.2
2319
Female, age 91, both hemispheres
313.4
2115
Male, age 80, left hemisphere
278.6
2454
Male, age 74, left hemisphere
193.7
1863
Male, age 55, unknown
178.0
1968
Male, age 76, left hemisphere
174.7
2787
Female, age 85, both hemispheres
150.5
2727
Male, age 61, right hemisphere
127.5
2109
Female, age 72, unknown
105.6
Pontine raphe nucleus nTPM: 133.8
2853
Male, age 76, midline
140.2
2122
Female, age 85, midline
127.3
Posteroventral cochlear nucleus nTPM: 201.5
2135
Female, age 91, both hemispheres
271.3
2070
Male, age 76, both hemispheres
251.9
2341
Male, age 80, both hemispheres
250.3
2371
Male, age 61, both hemispheres
133.0
2752
Female, age 85, both hemispheres
101.0
Principal sensory trigeminal nucleus nTPM: 193.4
2367
Female, age 91, left hemisphere
326.8
2008
Male, age 80, left hemisphere
186.8
2324
Male, age 76, both hemispheres
149.3
2158
Male, age 61, both hemispheres
110.9
Reticular pontine nucleus, caudal nTPM: 237.5
2457
Female, age 91, both hemispheres
333.7
2332
Male, age 80, right hemisphere
234.5
2559
Male, age 74, both hemispheres
200.6
2092
Male, age 76, both hemispheres
181.1
Reticular pontine nucleus, oral nTPM: 218.0
2366
Female, age 91, both hemispheres
273.2
2361
Male, age 74, both hemispheres
221.2
2012
Female, age 85, both hemispheres
215.6
2167
Male, age 76, both hemispheres
203.5
1939
Male, age 80, both hemispheres
176.5
Reticulotegmental nucleus nTPM: 192.3
2333
Male, age 80, both hemispheres
222.1
2322
Female, age 91, both hemispheres
204.9
2452
Male, age 74, both hemispheres
201.3
2325
Male, age 76, both hemispheres
141.0
Spinal trigeminal nucleus, oral nTPM: 162.6
2164
Male, age 80, both hemispheres
242.6
2737
Female, age 85, both hemispheres
138.6
1978
Male, age 76, both hemispheres
106.7
Subcoeruleus area nTPM: 183.1
2369
Female, age 85, left hemisphere
307.7
2089
Male, age 76, left hemisphere
204.8
2451
Male, age 74, both hemispheres
152.8
1958
Male, age 80, both hemispheres
130.9
2323
Female, age 91, left hemisphere
119.0
Superior olive nTPM: 198.8
2329
Male, age 80, right hemisphere
279.3
2561
Female, age 91, both hemispheres
272.4
1875
Female, age 85, both hemispheres
185.6
2020
Male, age 76, both hemispheres
167.3
2364
Male, age 74, right hemisphere
89.5
Ventral periolivary nuclei nTPM: 188.7
2794
Female, age 91, left hemisphere
229.2
2023
Male, age 76, both hemispheres
224.9
2165
Male, age 80, both hemispheres
159.3
2130
Female, age 85, both hemispheres
141.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 183.4
2456
Female, age 91, both hemispheres
287.9
2840
Female, age 85, both hemispheres
231.1
2161
Male, age 80, both hemispheres
209.7
2359
Male, age 61, both hemispheres
131.6
2449
Male, age 74, both hemispheres
130.1
1959
Male, age 76, both hemispheres
110.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.3
Pig sample
Sample description
nTPM
Pons nTPM: 4.3
Samples: 4
Max nTPM: 12.8
Min nTPM: 1.2
Sample A
Female
12.8
Sample B
Female
1.3
Sample C
Male
1.2
Sample D
Male
2.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
