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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.6
nTPM
HPA Brain:
54.9
nTPM
GTEx:
13.6
nTPM
FANTOM5:
24.7
Scaled Tags Per Million
Pig:
63.7
nTPM
Mouse:
30.0
nTPM
Allen mouse:
0.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 43.3
2219
Male, age 76, both hemispheres
53.7
2666
Male, age 74, left hemisphere
52.2
1827
Male, age 72, unknown
51.6
2828
Female, age 72, unknown
50.0
2019
Male, age 18, unknown
45.0
1833
Male, age 53, unknown
38.6
1830
Male, age 51, unknown
37.9
2586
Male, age 75, left hemisphere
36.9
1870
Female, age 42, unknown
33.9
2411
Female, age 72, unknown
33.3
Dorsal raphe nucleus nTPM: 32.9
2750
Male, age 76, both hemispheres
46.5
2047
Male, age 72, unknown
34.6
1828
Male, age 53, unknown
30.0
2016
Female, age 72, unknown
28.3
2298
Female, age 72, unknown
25.0
Inferior colliculus nTPM: 46.8
2849
Male, age 72, unknown
50.6
1890
Male, age 53, unknown
45.7
2097
Female, age 72, unknown
45.5
1848
Female, age 42, unknown
45.4
Median raphe nucleus nTPM: 42.4
2220
Male, age 76, midline
42.4
Periaquaductal grey, anterior nTPM: 54.3
1947
Male, age 18, unknown
62.2
1795
Male, age 51, unknown
59.5
2502
Female, age 75, unknown
41.1
Periaquaductal grey, dorsal nTPM: 43.0
2850
Male, age 76, both hemispheres
44.4
1831
Male, age 72, unknown
43.9
2464
Female, age 72, unknown
42.8
1840
Male, age 53, unknown
40.9
Periaquaductal grey, lateral nTPM: 37.5
2053
Male, age 18, unknown
41.2
2140
Male, age 76, both hemispheres
37.9
2272
Male, age 74, both hemispheres
33.5
Pretectal area nTPM: 54.9
1816
Male, age 51, unknown
79.1
1944
Female, age 72, unknown
72.6
2007
Male, age 72, unknown
67.2
1817
Female, age 42, unknown
65.7
1815
Male, age 53, unknown
64.7
2667
Female, age 75, unknown
53.9
2407
Male, age 75, both hemispheres
45.3
2316
Male, age 76, right hemisphere
44.0
2224
Female, age 72, unknown
38.5
2825
Male, age 18, unknown
38.3
2273
Male, age 74, both hemispheres
34.5
Red nucleus nTPM: 42.2
2588
Male, age 74, left hemisphere
51.4
2725
Female, age 75, unknown
50.7
2503
Female, age 72, unknown
49.1
2584
Male, age 75, left hemisphere
46.8
2823
Male, age 76, right hemisphere
45.1
1954
Female, age 42, unknown
42.7
1865
Male, age 51, unknown
42.3
2785
Male, age 18, unknown
41.8
1904
Male, age 53, unknown
39.6
2227
Male, age 72, unknown
34.9
2769
Male, age 72, unknown
32.6
1821
Female, age 72, unknown
29.8
Substantia nigra nTPM: 46.7
1889
Female, age 72, unknown
58.1
1916
Female, age 42, unknown
50.8
1941
Male, age 53, unknown
47.4
2241
Male, age 72, unknown
47.4
2583
Male, age 75, right hemisphere
47.1
2409
Female, age 72, unknown
46.2
2665
Male, age 74, both hemispheres
46.0
1851
Male, age 51, unknown
43.3
2590
Female, age 75, unknown
41.2
2699
Male, age 18, unknown
39.7
Superior colliculus nTPM: 51.4
1796
Male, age 53, unknown
61.9
2087
Female, age 72, unknown
61.9
2261
Male, age 18, unknown
60.3
2668
Female, age 75, unknown
59.8
1895
Male, age 76, right hemisphere
52.7
1913
Female, age 42, unknown
50.1
2587
Male, age 74, left hemisphere
43.9
1995
Male, age 72, unknown
41.2
1839
Male, age 51, unknown
40.9
2664
Male, age 75, both hemispheres
40.8
Ventral tegmental area nTPM: 43.8
2223
Female, age 72, unknown
55.3
2218
Male, age 76, both hemispheres
46.7
2410
Female, age 72, unknown
43.5
1915
Female, age 42, unknown
41.0
1942
Male, age 51, unknown
38.3
2021
Male, age 53, unknown
37.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 13.6
Samples: 139
Max nTPM: 39.4
Min nTPM: 6.6
Std nTPM: 4.5
Median nTPM: 12.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
39.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
27.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
27.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
26.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
25.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
22.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
21.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
20.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
19.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
19.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
19.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
19.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
19.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
19.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
18.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
18.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
18.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
18.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
18.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
17.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
17.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
17.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
17.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
16.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
16.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
16.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
16.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
15.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
15.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
15.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
15.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
15.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
15.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
15.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
15.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
14.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
14.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
14.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
14.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
14.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
14.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
14.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
14.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
14.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
14.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
14.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
13.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
13.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
13.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
13.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
13.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
13.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
13.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
13.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
13.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
13.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
13.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
13.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
13.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
12.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
12.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
12.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
12.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
12.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
12.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
12.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
12.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
12.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
12.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
12.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
11.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
11.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
11.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
11.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
11.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
11.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
11.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
11.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
11.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
11.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
11.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
11.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
11.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
11.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
10.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
10.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
10.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
10.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
10.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
10.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
10.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
10.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
10.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
10.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
10.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
10.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
10.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
10.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
10.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
9.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
9.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
9.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
9.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
9.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
9.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
8.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
8.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
7.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 30.0
Samples: 4
Max nTPM: 34.1
Min nTPM: 25.3
Sample A
Male
25.3
Sample B
Male
29.8
Sample C
Female
30.7
Sample D
Female
34.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.