HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:83.7 nTPM
GTEx:21.1 nTPM
FANTOM5:68.0 Scaled Tags Per Million
Pig:54.6 nTPM
Mouse:55.5 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019734Antibody HPA055800
Glial cells MediumLow
Neuronal cells HighMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 83.7
Sample id Sample description nTPM
Hippocampus
nTPM: 83.7
2529 Female, age 94, left hemisphere 94.0
2621 Female, age 67, right hemisphere 88.2
2148 Female, age 91, left hemisphere 85.0
1911 Female, age 85, right hemisphere 80.2
1855 Male, age 76, left hemisphere 77.9
1898 Male, age 80, left hemisphere 77.0
Dentate gyrus
nTPM: 79.3
2246 Female, age 85, both hemispheres 86.2
2530 Female, age 94, left hemisphere 85.2
2531 Female, age 67, both hemispheres 85.0
2010 Male, age 76, both hemispheres 75.2
1927 Female, age 91, both hemispheres 73.2
2528 Male, age 74, both hemispheres 71.3
Entorhinal gyrus
nTPM: 78.9
2117 Female, age 91, right hemisphere 84.7
1938 Female, age 85, left hemisphere 80.2
2686 Male, age 75, right hemisphere 78.4
2764 Male, age 80, right hemisphere 78.0
1787 Male, age 76, left hemisphere 77.2
2613 Female, age 94, left hemisphere 75.1
Hippocampus, CA1
nTPM: 78.4
2527 Male, age 74, both hemispheres 80.6
2749 Male, age 80, left hemisphere 80.5
1873 Female, age 85, both hemispheres 79.2
2082 Female, age 91, right hemisphere 79.2
2045 Male, age 76, both hemispheres 72.3
Hippocampus, CA2
nTPM: 78.1
1963 Male, age 80, left hemisphere 88.8
2437 Female, age 94, left hemisphere 80.9
2113 Female, age 91, right hemisphere 77.6
1892 Male, age 76, both hemispheres 74.5
1940 Female, age 85, left hemisphere 73.4
2249 Male, age 74, both hemispheres 73.4
Hippocampus, CA3
nTPM: 82.8
2436 Male, age 74, both hemispheres 96.4
2861 Female, age 67, both hemispheres 85.5
2137 Male, age 80, left hemisphere 82.9
2620 Female, age 94, left hemisphere 80.0
1891 Female, age 85, both hemispheres 78.8
1867 Male, age 76, both hemispheres 73.3
Parahippocampal cortex
nTPM: 78.9
2532 Female, age 72, left hemisphere 88.7
2245 Female, age 91, both hemispheres 85.2
2622 Female, age 67, right hemisphere 81.0
1850 Male, age 80, both hemispheres 80.6
2250 Female, age 67, right hemisphere 80.1
2018 Male, age 76, both hemispheres 78.7
1933 Female, age 85, both hemispheres 78.1
2692 Male, age 74, both hemispheres 76.6
1990 Female, age 91, right hemisphere 72.4
2693 Female, age 94, both hemispheres 67.9
Perirhinal gyrus
nTPM: 79.3
1841 Female, age 85, right hemisphere 82.3
1847 Female, age 91, left hemisphere 80.8
1794 Male, age 80, right hemisphere 80.3
2521 Female, age 94, right hemisphere 78.4
2848 Male, age 76, right hemisphere 74.7
Subiculum
nTPM: 81.7
2438 Female, age 94, left hemisphere 96.3
2042 Male, age 76, both hemispheres 83.8
2619 Male, age 74, both hemispheres 80.0
1977 Female, age 85, both hemispheres 77.6
2729 Female, age 91, right hemisphere 76.7
1901 Male, age 80, both hemispheres 75.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 21.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.1
Samples: 197

Max nTPM: 30.8
Min nTPM: 15.1
Std nTPM: 2.4
Median nTPM: 20.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 30.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 30.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 28.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 27.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 26.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 26.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 26.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 26.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 26.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 26.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 25.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.0
FF:10153-102I9 76 years, female 99.8
FF:10169-103B7 60 years, female 36.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 54.6
Pig sample Sample description nTPM
Subiculum
nTPM: 53.4
Samples: 4

Max nTPM: 60.8
Min nTPM: 49.9
Sample A Female 60.8
Sample B Female 49.9
Sample C Male 51.5
Sample D Male 51.2
Dorsal hippocampus
nTPM: 50.4
Samples: 4

Max nTPM: 56.3
Min nTPM: 45.8
Sample A Female 56.3
Sample B Female 48.1
Sample C Male 51.5
Sample D Male 45.8
Entorhinal cortex
nTPM: 54.7
Samples: 4

Max nTPM: 58.7
Min nTPM: 51.1
Sample A Female 57.4
Sample B Female 51.4
Sample C Male 58.7
Sample D Male 51.1
Ventral hippocampus
nTPM: 49.0
Samples: 4

Max nTPM: 56.3
Min nTPM: 40.3
Sample A Female 46.6
Sample B Female 40.3
Sample C Male 56.3
Sample D Male 52.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 55.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.5
Samples: 4

Max nTPM: 58.2
Min nTPM: 52.9
Sample A Male 52.9
Sample B Male 53.1
Sample C Female 57.9
Sample D Female 58.2
Hippocampal formation
nTPM: 54.4
Samples: 4

Max nTPM: 57.1
Min nTPM: 52.3
Sample A Male 52.9
Sample B Male 57.1
Sample C Female 55.4
Sample D Female 52.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
70813167 Antisense, RP_050712_03_D01, Mouse strain C57BL/6J (56 days, male) 3.6
75080620 Antisense, RP_060412_04_G02, Mouse strain C57BL/6J (56 days, male) 2.4

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