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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRM2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRM2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.4
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
395
Tumor
1.3
161
Tumor
1.3
557
Tumor
0.9
617
Tumor
0.8
537
Tumor
0.7
491
Tumor
0.7
267
Tumor
0.6
285
Tumor
0.6
113
Tumor
0.6
851
Tumor
0.6
367
Tumor
0.6
873
Tumor
0.6
865
Tumor
0.5
147
Tumor
0.5
721
Tumor
0.4
327
Tumor
0.4
451
Tumor
0.4
443
Tumor
0.4
925
Tumor
0.4
112
Tumor
0.4
257
Tumor
0.4
1041
Tumor
0.4
745
Tumor
0.4
478
Normal
0.4
434
Normal
0.4
268
Normal
0.4
353
Tumor
0.3
641
Tumor
0.3
715
Tumor
0.3
445
Tumor
0.3
976
Normal
0.3
685
Tumor
0.3
313
Tumor
0.3
262
Normal
0.3
713
Tumor
0.3
421
Tumor
0.3
671
Tumor
0.3
1043
Tumor
0.3
663
Tumor
0.3
823
Tumor
0.2
362
Normal
0.2
444
Normal
0.2
937
Tumor
0.2
354
Normal
0.2
877
Tumor
0.2
1032
Normal
0.2
375
Tumor
0.2
231
Tumor
0.2
957
Tumor
0.2
467
Tumor
0.2
172
Normal
0.2
185
Tumor
0.2
341
Tumor
0.2
463
Tumor
0.2
141
Tumor
0.2
272
Normal
0.2
435
Tumor
0.2
916
Normal
0.2
278
Normal
0.2
474
Normal
0.2
258
Normal
0.2
328
Normal
0.2
127
Tumor
0.2
312
Normal
0.2
128
Normal
0.2
191
Tumor
0.2
187
Tumor
0.2
1028
Normal
0.2
232
Normal
0.2
917
Tumor
0.2
423
Tumor
0.2
188
Normal
0.2
311
Tumor
0.1
471
Tumor
0.1
1022
Normal
0.1
852
Normal
0.1
558
Normal
0.1
368
Normal
0.1
223
Tumor
0.1
366
Normal
0.1
114
Normal
0.1
126
Normal
0.1
864
Normal
0.1
224
Normal
0.1
452
Normal
0.1
951
Tumor
0.1
918
Normal
0.1
432
Normal
0.1
227
Tumor
0.1
343
Tumor
0.1
468
Normal
0.1
755
Tumor
0.1
228
Normal
0.1
466
Normal
0.1
277
Tumor
0.1
738
Normal
0.1
538
Normal
0.1
728
Normal
0.1
355
Tumor
0.1
628
Normal
0.1
915
Tumor
0.1
358
Normal
0.1
162
Normal
0.1
567
Tumor
0.1
136
Normal
0.1
422
Normal
0.1
135
Tumor
0.1
413
Tumor
0.1
616
Normal
0.1
132
Normal
0.1
1046
Normal
0.1
284
Normal
0.0
138
Normal
0.0
958
Normal
0.0
387
Tumor
0.0
427
Tumor
0.0
956
Normal
0.0
462
Normal
0.0
978
Normal
0.0
428
Normal
0.0
564
Normal
0.0
716
Normal
0.0
536
Normal
0.0
723
Tumor
0.0
817
Tumor
0.0
148
Normal
0.0
874
Normal
0.0
424
Normal
0.0
361
Tumor
0.0
513
Tumor
0.0
944
Normal
0.0
664
Normal
0.0
786
Normal
0.0
514
Normal
0.0
314
Normal
0.0
648
Normal
0.0
394
Normal
0.0
868
Normal
0.0
912
Normal
0.0
145
Tumor
0.0
386
Normal
0.0
984
Normal
0.0
662
Normal
0.0
533
Tumor
0.0
384
Normal
0.0
146
Normal
0.0
448
Normal
0.0
494
Normal
0.0
926
Normal
0.0
498
Normal
0.0
914
Normal
0.0
1044
Normal
0.0
742
Normal
0.0
261
Tumor
0.0
436
Normal
0.0
414
Normal
0.0
212
Normal
0.0
966
Normal
0.0
968
Normal
0.0
911
Tumor
0.0
221
Tumor
0.0
883
Tumor
0.0
1042
Normal
0.0
376
Normal
0.0
461
Tumor
0.0
954
Normal
0.0
696
Normal
0.0
412
Normal
0.0
967
Tumor
0.0
722
Normal
-0.1
363
Tumor
-0.1
672
Normal
-0.1
881
Tumor
-0.1
456
Normal
-0.1
483
Tumor
-0.1
271
Tumor
-0.1
714
Normal
-0.1
446
Normal
-0.1
125
Tumor
-0.1
746
Normal
-0.1
493
Tumor
-0.1
756
Normal
-0.1
492
Normal
-0.1
981
Tumor
-0.1
426
Normal
-0.1
568
Normal
-0.1
824
Normal
-0.1
431
Tumor
-0.1
286
Normal
-0.1
534
Normal
-0.1
352
Normal
-0.1
331
Tumor
-0.1
686
Normal
-0.1
356
Normal
-0.1
213
Tumor
-0.1
666
Normal
-0.1
137
Tumor
-0.1
283
Tumor
-0.1
955
Tumor
-0.1
858
Normal
-0.1
815
Tumor
-0.1
415
Tumor
-0.1
743
Tumor
-0.1
416
Normal
-0.1
924
Normal
-0.1
1045
Tumor
-0.1
697
Tumor
-0.1
464
Normal
-0.1
111
Normal
-0.1
214
Normal
-0.1
572
Normal
-0.1
1016
Normal
-0.1
472
Normal
-0.1
186
Normal
-0.1
642
Normal
-0.1
861
Tumor
-0.1
816
Normal
-0.1
433
Tumor
-0.1
124
Normal
-0.1
1026
Normal
-0.1
171
Tumor
-0.1
1014
Normal
-0.1
665
Tumor
-0.1
862
Normal
-0.1
192
Normal
-0.1
342
Normal
-0.2
392
Normal
-0.2
195
Tumor
-0.2
964
Normal
-0.2
884
Normal
-0.2
866
Normal
-0.2
383
Tumor
-0.2
344
Normal
-0.2
618
Normal
-0.2
396
Normal
-0.2
297
Tumor
-0.2
952
Normal
-0.2
545
Tumor
-0.2
484
Normal
-0.2
131
Tumor
-0.2
574
Normal
-0.2
518
Normal
-0.2
388
Normal
-0.2
365
Tumor
-0.2
818
Normal
-0.2
546
Normal
-0.2
385
Tumor
-0.2
142
Normal
-0.2
391
Tumor
-0.2
627
Tumor
-0.2
563
Tumor
-0.2
727
Tumor
-0.2
982
Normal
-0.2
698
Normal
-0.2
364
Normal
-0.2
814
Normal
-0.2
1013
Tumor
-0.2
332
Normal
-0.2
298
Normal
-0.2
525
Tumor
-0.2
528
Normal
-0.2
482
Normal
-0.2
1015
Tumor
-0.2
778
Normal
-0.2
963
Tumor
-0.2
867
Tumor
-0.2
922
Normal
-0.2
218
Normal
-0.2
615
Tumor
-0.2
481
Tumor
-0.2
975
Tumor
-0.3
965
Tumor
-0.3
526
Normal
-0.3
1025
Tumor
-0.3
465
Tumor
-0.3
857
Tumor
-0.3
357
Tumor
-0.3
635
Tumor
-0.3
524
Normal
-0.3
1021
Tumor
-0.3
425
Tumor
-0.3
211
Tumor
-0.3
222
Normal
-0.3
447
Tumor
-0.3
196
Normal
-0.3
882
Normal
-0.3
523
Tumor
-0.3
1027
Tumor
-0.3
943
Tumor
-0.3
938
Normal
-0.3
217
Tumor
-0.3
983
Tumor
-0.3
516
Normal
-0.3
1031
Tumor
-0.3
535
Tumor
-0.3
488
Normal
-0.4
913
Tumor
-0.4
636
Normal
-0.4
813
Tumor
-0.4
777
Tumor
-0.4
785
Tumor
-0.4
351
Tumor
-0.4
744
Normal
-0.4
661
Tumor
-0.4
455
Tumor
-0.4
517
Tumor
-0.4
393
Tumor
-0.4
953
Tumor
-0.4
497
Tumor
-0.4
553
Tumor
-0.5
477
Tumor
-0.5
554
Normal
-0.5
741
Tumor
-0.5
878
Normal
-0.5
921
Tumor
-0.5
487
Tumor
-0.5
571
Tumor
-0.5
123
Tumor
-0.6
515
Tumor
-0.6
863
Tumor
-0.6
527
Tumor
-0.6
724
Normal
-0.6
573
Tumor
-0.6
737
Tumor
-0.6
411
Tumor
-0.7
473
Tumor
-0.7
647
Tumor
-0.7
923
Tumor
-0.8
695
Tumor
-0.8
977
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
