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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
304.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1203.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1035.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
919.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
808.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
775.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
736.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
727.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
700.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
694.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
683.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
671.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
652.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
650.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
649.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
635.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
615.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
614.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
607.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
599.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
591.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
590.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
588.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
586.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
584.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
582.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
578.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
575.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
573.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
571.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
570.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
560.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
554.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
549.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
539.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
536.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
532.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
517.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
515.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
508.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
504.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
498.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
496.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
494.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
489.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
478.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
473.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
471.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
466.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
463.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
461.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
459.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
455.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
452.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
451.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
450.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
448.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
445.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
442.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
440.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
433.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
431.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
431.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
427.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
426.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
426.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
423.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
421.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
420.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
418.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
418.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
417.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
417.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
414.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
413.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
413.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
405.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
404.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
403.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
402.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
400.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
400.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
399.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
394.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
392.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
392.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
392.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
390.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
386.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
386.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
386.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
385.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
382.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
380.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
378.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
376.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
376.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
371.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
367.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
367.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
364.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
364.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
363.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
362.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
361.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
359.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
359.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
357.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
357.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
356.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
353.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
353.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
351.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
349.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
347.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
347.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
346.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
345.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
344.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
343.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
343.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
342.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
341.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
338.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
335.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
332.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
332.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
331.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
330.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
329.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
326.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
324.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
322.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
322.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
321.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
319.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
319.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
318.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
318.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
318.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
317.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
313.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
312.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
312.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
311.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
307.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
307.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
306.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
305.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
305.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
304.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
301.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
301.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
300.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
298.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
298.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
297.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
296.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
295.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
294.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
294.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
293.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
293.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
292.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
291.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
287.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
287.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
287.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
286.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
284.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
283.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
282.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
282.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
282.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
281.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
281.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
280.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
280.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
280.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
279.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
279.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
279.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
278.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
277.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
275.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
274.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
274.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
274.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
270.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
269.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
269.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
268.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
267.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
266.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
266.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
265.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
264.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
264.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
260.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
259.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
259.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
257.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
256.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
256.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
255.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
254.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
254.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
251.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
251.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
251.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
251.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
249.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
247.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
247.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
246.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
246.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
246.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
245.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
245.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
244.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
243.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
242.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
241.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
238.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
238.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
237.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
236.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
235.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
235.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
234.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
232.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
231.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
229.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
229.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
228.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
227.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
227.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
226.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
224.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
224.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
223.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
221.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
220.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
217.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
216.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
214.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
213.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
212.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
212.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
211.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
211.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
208.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
207.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
207.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
207.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
206.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
206.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
205.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
205.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
204.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
203.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
202.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
200.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
200.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
199.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
198.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
198.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
198.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
197.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
197.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
195.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
194.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
194.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
193.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
193.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
191.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
190.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
190.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
189.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
189.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
188.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
186.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
184.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
183.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
182.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
182.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
180.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
180.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
179.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
177.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
172.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
170.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
169.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
169.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
168.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
164.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
162.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
161.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
160.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
160.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
160.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
160.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
160.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
159.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
159.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
159.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
157.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
156.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
156.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
155.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
155.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
155.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
155.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
153.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
152.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
152.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
151.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
149.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
148.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
147.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
146.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
145.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
144.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
143.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
141.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
140.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
140.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
139.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
136.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
136.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
131.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
130.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
130.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
127.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
125.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
124.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
122.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
120.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
118.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
116.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
114.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
114.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
114.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
108.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
107.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
102.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
98.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
93.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
87.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
85.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
81.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
77.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
76.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
69.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
69.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
68.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
65.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
65.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
64.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
57.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
46.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
37.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HSPA5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
266.4
Number of samples
231
Samples
Sample
Description
TPM
DO50857
0 years, male, NA, stage:2, alive, 210 days
1241.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
762.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
640.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
611.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
588.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
584.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
562.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
536.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
524.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
516.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
511.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
492.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
489.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
487.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
485.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
482.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
478.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
477.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
475.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
454.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
452.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
447.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
441.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
441.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
434.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
432.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
431.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
426.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
422.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
419.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
416.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
414.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
398.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
397.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
393.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
390.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
385.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
385.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
385.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
383.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
379.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
374.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
369.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
368.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
362.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
360.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
359.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
359.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
357.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
351.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
346.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
337.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
335.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
334.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
331.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
330.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
330.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
329.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
325.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
323.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
323.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
323.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
320.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
320.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
319.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
317.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
314.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
310.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
301.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
300.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
299.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
299.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
298.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
293.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
293.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
291.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
290.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
290.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
290.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
290.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
286.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
285.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
284.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
284.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
283.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
283.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
281.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
279.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
278.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
277.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
275.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
274.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
273.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
273.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
273.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
273.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
272.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
271.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
269.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
269.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
266.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
265.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
265.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
264.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
263.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
263.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
261.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
257.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
255.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
250.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
246.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
246.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
246.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
244.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
240.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
239.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
239.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
237.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
232.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
231.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
231.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
227.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
227.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
226.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
226.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
226.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
223.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
223.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
220.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
219.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
218.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
216.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
213.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
213.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
212.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
210.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
210.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
209.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
209.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
209.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
208.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
206.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
205.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
204.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
204.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
203.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
203.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
202.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
202.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
200.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
199.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
198.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
197.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
197.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
196.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
196.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
195.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
193.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
192.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
191.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
191.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
191.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
188.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
187.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
186.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
185.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
185.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
185.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
181.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
178.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
177.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
176.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
175.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
175.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
169.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
167.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
166.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
164.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
162.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
162.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
161.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
161.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
161.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
160.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
158.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
156.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
153.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
151.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
149.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
148.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
147.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
147.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
146.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
145.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
145.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
145.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
145.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
144.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
140.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
138.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
137.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
134.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
133.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
133.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
130.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
125.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
121.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
120.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
116.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
116.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
116.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
115.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
114.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
111.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
109.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
108.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
107.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
105.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
100.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
98.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
97.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
96.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
95.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
93.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
93.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
92.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
86.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
84.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
78.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
47.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
43.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
227
Tumor
2.6
777
Tumor
1.2
963
Tumor
1.1
851
Tumor
0.8
813
Tumor
0.7
937
Tumor
0.7
1025
Tumor
0.6
743
Tumor
0.6
983
Tumor
0.6
523
Tumor
0.6
147
Tumor
0.6
697
Tumor
0.5
724
Normal
0.5
863
Tumor
0.5
1015
Tumor
0.4
497
Tumor
0.4
814
Normal
0.4
955
Tumor
0.4
745
Tumor
0.4
527
Tumor
0.4
978
Normal
0.4
727
Tumor
0.3
857
Tumor
0.3
517
Tumor
0.3
395
Tumor
0.3
195
Tumor
0.3
327
Tumor
0.3
285
Tumor
0.3
445
Tumor
0.3
537
Tumor
0.3
567
Tumor
0.3
1021
Tumor
0.3
526
Normal
0.3
467
Tumor
0.3
257
Tumor
0.3
191
Tumor
0.3
528
Normal
0.3
557
Tumor
0.3
343
Tumor
0.3
573
Tumor
0.3
135
Tumor
0.3
286
Normal
0.3
823
Tumor
0.2
1044
Normal
0.2
778
Normal
0.2
524
Normal
0.2
696
Normal
0.2
553
Tumor
0.2
977
Tumor
0.2
926
Normal
0.2
755
Tumor
0.2
1014
Normal
0.2
113
Tumor
0.2
984
Normal
0.2
514
Normal
0.2
223
Tumor
0.2
427
Tumor
0.2
435
Tumor
0.2
533
Tumor
0.2
353
Tumor
0.2
554
Normal
0.2
1043
Tumor
0.2
913
Tumor
0.2
228
Normal
0.2
351
Tumor
0.2
218
Normal
0.2
721
Tumor
0.2
125
Tumor
0.2
212
Normal
0.2
873
Tumor
0.2
944
Normal
0.2
1026
Normal
0.2
1016
Normal
0.2
967
Tumor
0.1
723
Tumor
0.1
686
Normal
0.1
187
Tumor
0.1
534
Normal
0.1
515
Tumor
0.1
964
Normal
0.1
756
Normal
0.1
368
Normal
0.1
968
Normal
0.1
284
Normal
0.1
487
Tumor
0.1
145
Tumor
0.1
965
Tumor
0.1
518
Normal
0.1
981
Tumor
0.1
448
Normal
0.1
918
Normal
0.1
713
Tumor
0.1
665
Tumor
0.1
488
Normal
0.1
866
Normal
0.1
817
Tumor
0.1
447
Tumor
0.1
536
Normal
0.1
728
Normal
0.1
636
Normal
0.1
217
Tumor
0.1
868
Normal
0.1
558
Normal
0.1
412
Normal
0.1
267
Tumor
0.1
953
Tumor
0.1
922
Normal
0.1
982
Normal
0.1
966
Normal
0.1
224
Normal
0.1
615
Tumor
0.1
1046
Normal
0.0
415
Tumor
0.0
738
Normal
0.0
494
Normal
0.0
474
Normal
0.0
392
Normal
0.0
912
Normal
0.0
356
Normal
0.0
786
Normal
0.0
482
Normal
0.0
463
Tumor
0.0
393
Tumor
0.0
387
Tumor
0.0
357
Tumor
0.0
1022
Normal
0.0
546
Normal
0.0
376
Normal
0.0
314
Normal
0.0
864
Normal
0.0
958
Normal
0.0
484
Normal
0.0
414
Normal
0.0
884
Normal
0.0
481
Tumor
0.0
498
Normal
0.0
824
Normal
0.0
954
Normal
0.0
938
Normal
0.0
1028
Normal
0.0
332
Normal
0.0
923
Tumor
0.0
472
Normal
0.0
1042
Normal
0.0
816
Normal
0.0
617
Tumor
0.0
142
Normal
0.0
852
Normal
0.0
956
Normal
0.0
722
Normal
0.0
976
Normal
0.0
462
Normal
0.0
952
Normal
0.0
951
Tumor
0.0
858
Normal
0.0
271
Tumor
0.0
916
Normal
0.0
714
Normal
0.0
328
Normal
0.0
492
Normal
0.0
493
Tumor
0.0
478
Normal
0.0
364
Normal
0.0
452
Normal
0.0
698
Normal
-0.1
131
Tumor
-0.1
742
Normal
-0.1
232
Normal
-0.1
862
Normal
-0.1
385
Tumor
-0.1
572
Normal
-0.1
878
Normal
-0.1
352
Normal
-0.1
882
Normal
-0.1
746
Normal
-0.1
1032
Normal
-0.1
477
Tumor
-0.1
394
Normal
-0.1
171
Tumor
-0.1
865
Tumor
-0.1
277
Tumor
-0.1
466
Normal
-0.1
424
Normal
-0.1
396
Normal
-0.1
568
Normal
-0.1
628
Normal
-0.1
471
Tumor
-0.1
818
Normal
-0.1
616
Normal
-0.1
737
Tumor
-0.1
716
Normal
-0.1
535
Tumor
-0.1
358
Normal
-0.1
861
Tumor
-0.1
111
Normal
-0.1
924
Normal
-0.1
411
Tumor
-0.1
917
Tumor
-0.1
491
Tumor
-0.1
426
Normal
-0.1
635
Tumor
-0.1
516
Normal
-0.1
741
Tumor
-0.1
648
Normal
-0.1
136
Normal
-0.1
877
Tumor
-0.1
564
Normal
-0.1
148
Normal
-0.1
391
Tumor
-0.1
436
Normal
-0.1
468
Normal
-0.1
425
Tumor
-0.1
473
Tumor
-0.1
662
Normal
-0.1
642
Normal
-0.1
433
Tumor
-0.1
525
Tumor
-0.1
262
Normal
-0.1
112
Tumor
-0.1
258
Normal
-0.1
172
Normal
-0.1
538
Normal
-0.1
186
Normal
-0.1
663
Tumor
-0.1
464
Normal
-0.1
422
Normal
-0.1
161
Tumor
-0.1
416
Normal
-0.1
446
Normal
-0.1
231
Tumor
-0.2
618
Normal
-0.2
138
Normal
-0.2
672
Normal
-0.2
196
Normal
-0.2
432
Normal
-0.2
915
Tumor
-0.2
874
Normal
-0.2
914
Normal
-0.2
671
Tumor
-0.2
375
Tumor
-0.2
785
Tumor
-0.2
428
Normal
-0.2
661
Tumor
-0.2
363
Tumor
-0.2
298
Normal
-0.2
124
Normal
-0.2
574
Normal
-0.2
666
Normal
-0.2
664
Normal
-0.2
362
Normal
-0.2
214
Normal
-0.2
114
Normal
-0.2
222
Normal
-0.2
127
Tumor
-0.2
162
Normal
-0.2
545
Tumor
-0.2
141
Tumor
-0.2
975
Tumor
-0.2
513
Tumor
-0.2
815
Tumor
-0.2
1027
Tumor
-0.2
384
Normal
-0.2
312
Normal
-0.2
128
Normal
-0.2
388
Normal
-0.2
867
Tumor
-0.2
137
Tumor
-0.2
344
Normal
-0.2
272
Normal
-0.2
361
Tumor
-0.2
423
Tumor
-0.2
126
Normal
-0.2
188
Normal
-0.2
268
Normal
-0.2
354
Normal
-0.2
715
Tumor
-0.2
434
Normal
-0.2
461
Tumor
-0.2
483
Tumor
-0.2
386
Normal
-0.2
921
Tumor
-0.2
283
Tumor
-0.2
123
Tumor
-0.3
883
Tumor
-0.3
132
Normal
-0.3
911
Tumor
-0.3
278
Normal
-0.3
367
Tumor
-0.3
1031
Tumor
-0.3
1045
Tumor
-0.3
355
Tumor
-0.3
943
Tumor
-0.3
451
Tumor
-0.3
744
Normal
-0.3
413
Tumor
-0.3
221
Tumor
-0.3
456
Normal
-0.3
342
Normal
-0.3
444
Normal
-0.3
331
Tumor
-0.3
571
Tumor
-0.3
313
Tumor
-0.3
957
Tumor
-0.3
443
Tumor
-0.3
1041
Tumor
-0.3
213
Tumor
-0.3
365
Tumor
-0.3
1013
Tumor
-0.3
383
Tumor
-0.3
641
Tumor
-0.3
146
Normal
-0.3
647
Tumor
-0.4
925
Tumor
-0.4
695
Tumor
-0.4
192
Normal
-0.4
311
Tumor
-0.4
366
Normal
-0.4
421
Tumor
-0.4
431
Tumor
-0.4
455
Tumor
-0.4
627
Tumor
-0.4
185
Tumor
-0.4
881
Tumor
-0.4
261
Tumor
-0.4
211
Tumor
-0.4
685
Tumor
-0.5
297
Tumor
-0.5
341
Tumor
-0.5
563
Tumor
-0.6
465
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.