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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIT1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.3
571
Tumor
1.3
957
Tumor
1.0
361
Tumor
0.8
358
Normal
0.7
865
Tumor
0.7
162
Normal
0.7
147
Tumor
0.7
186
Normal
0.7
367
Tumor
0.6
627
Tumor
0.6
925
Tumor
0.6
411
Tumor
0.6
368
Normal
0.6
635
Tumor
0.6
473
Tumor
0.6
491
Tumor
0.5
647
Tumor
0.5
435
Tumor
0.5
354
Normal
0.5
965
Tumor
0.5
958
Normal
0.5
366
Normal
0.5
387
Tumor
0.5
148
Normal
0.5
433
Tumor
0.5
514
Normal
0.5
671
Tumor
0.5
392
Normal
0.5
513
Tumor
0.5
567
Tumor
0.5
161
Tumor
0.5
393
Tumor
0.5
573
Tumor
0.4
537
Tumor
0.4
191
Tumor
0.4
376
Normal
0.4
172
Normal
0.4
618
Normal
0.4
497
Tumor
0.4
477
Tumor
0.4
722
Normal
0.4
391
Tumor
0.4
745
Tumor
0.4
642
Normal
0.4
713
Tumor
0.4
636
Normal
0.4
353
Tumor
0.3
661
Tumor
0.3
364
Normal
0.3
257
Tumor
0.3
663
Tumor
0.3
188
Normal
0.3
137
Tumor
0.3
877
Tumor
0.3
356
Normal
0.3
741
Tumor
0.3
113
Tumor
0.3
394
Normal
0.3
146
Normal
0.3
968
Normal
0.3
413
Tumor
0.3
314
Normal
0.3
195
Tumor
0.3
311
Tumor
0.3
375
Tumor
0.3
362
Normal
0.3
716
Normal
0.3
145
Tumor
0.3
357
Tumor
0.3
695
Tumor
0.3
616
Normal
0.3
915
Tumor
0.3
1032
Normal
0.3
557
Tumor
0.3
355
Tumor
0.3
685
Tumor
0.3
185
Tumor
0.2
128
Normal
0.2
686
Normal
0.2
112
Tumor
0.2
428
Normal
0.2
384
Normal
0.2
267
Tumor
0.2
135
Tumor
0.2
352
Normal
0.2
268
Normal
0.2
388
Normal
0.2
883
Tumor
0.2
416
Normal
0.2
396
Normal
0.2
124
Normal
0.2
342
Normal
0.2
1042
Normal
0.2
187
Tumor
0.2
272
Normal
0.2
526
Normal
0.2
283
Tumor
0.2
123
Tumor
0.2
873
Tumor
0.2
412
Normal
0.2
365
Tumor
0.2
727
Tumor
0.2
127
Tumor
0.2
816
Normal
0.2
755
Tumor
0.2
852
Normal
0.2
714
Normal
0.2
114
Normal
0.2
533
Tumor
0.2
278
Normal
0.2
525
Tumor
0.2
951
Tumor
0.2
818
Normal
0.2
484
Normal
0.2
665
Tumor
0.2
858
Normal
0.2
483
Tumor
0.2
615
Tumor
0.2
874
Normal
0.2
824
Normal
0.2
138
Normal
0.2
425
Tumor
0.1
518
Normal
0.1
884
Normal
0.1
332
Normal
0.1
386
Normal
0.1
131
Tumor
0.1
261
Tumor
0.1
298
Normal
0.1
312
Normal
0.1
423
Tumor
0.1
861
Tumor
0.1
696
Normal
0.1
132
Normal
0.1
111
Normal
0.1
422
Normal
0.1
395
Tumor
0.1
383
Tumor
0.1
328
Normal
0.1
628
Normal
0.1
228
Normal
0.1
926
Normal
0.1
862
Normal
0.1
482
Normal
0.1
258
Normal
0.1
554
Normal
0.1
136
Normal
0.1
443
Tumor
0.1
546
Normal
0.1
341
Tumor
0.1
953
Tumor
0.1
126
Normal
0.1
446
Normal
0.1
516
Normal
0.1
427
Tumor
0.1
662
Normal
0.1
517
Tumor
0.1
196
Normal
0.1
1025
Tumor
0.1
344
Normal
0.1
262
Normal
0.1
431
Tumor
0.0
912
Normal
0.0
568
Normal
0.0
823
Tumor
0.0
414
Normal
0.0
211
Tumor
0.0
1022
Normal
0.0
1046
Normal
0.0
545
Tumor
0.0
698
Normal
0.0
213
Tumor
0.0
436
Normal
0.0
286
Normal
0.0
864
Normal
0.0
327
Tumor
0.0
648
Normal
0.0
1041
Tumor
0.0
882
Normal
0.0
424
Normal
0.0
515
Tumor
0.0
967
Tumor
0.0
572
Normal
0.0
277
Tumor
0.0
222
Normal
0.0
363
Tumor
0.0
943
Tumor
0.0
1021
Tumor
0.0
444
Normal
0.0
672
Normal
0.0
911
Tumor
0.0
535
Tumor
0.0
558
Normal
0.0
493
Tumor
0.0
964
Normal
0.0
963
Tumor
0.0
171
Tumor
0.0
192
Normal
0.0
976
Normal
0.0
868
Normal
0.0
916
Normal
0.0
564
Normal
0.0
966
Normal
0.0
1026
Normal
0.0
214
Normal
-0.1
857
Tumor
-0.1
232
Normal
-0.1
1028
Normal
-0.1
426
Normal
-0.1
697
Tumor
-0.1
534
Normal
-0.1
923
Tumor
-0.1
664
Normal
-0.1
331
Tumor
-0.1
715
Tumor
-0.1
937
Tumor
-0.1
434
Normal
-0.1
351
Tumor
-0.1
488
Normal
-0.1
738
Normal
-0.1
125
Tumor
-0.1
574
Normal
-0.1
415
Tumor
-0.1
217
Tumor
-0.1
814
Normal
-0.1
1045
Tumor
-0.1
218
Normal
-0.1
487
Tumor
-0.1
777
Tumor
-0.1
913
Tumor
-0.1
867
Tumor
-0.1
472
Normal
-0.1
448
Normal
-0.1
1027
Tumor
-0.1
778
Normal
-0.1
343
Tumor
-0.1
878
Normal
-0.1
538
Normal
-0.1
918
Normal
-0.1
385
Tumor
-0.1
641
Tumor
-0.1
524
Normal
-0.2
481
Tumor
-0.2
617
Tumor
-0.2
284
Normal
-0.2
527
Tumor
-0.2
728
Normal
-0.2
432
Normal
-0.2
922
Normal
-0.2
227
Tumor
-0.2
313
Tumor
-0.2
924
Normal
-0.2
421
Tumor
-0.2
141
Tumor
-0.2
494
Normal
-0.2
851
Tumor
-0.2
881
Tumor
-0.2
737
Tumor
-0.2
461
Tumor
-0.2
756
Normal
-0.2
474
Normal
-0.2
956
Normal
-0.2
984
Normal
-0.2
142
Normal
-0.2
981
Tumor
-0.2
563
Tumor
-0.2
297
Tumor
-0.2
917
Tumor
-0.2
536
Normal
-0.2
938
Normal
-0.2
492
Normal
-0.2
721
Tumor
-0.2
224
Normal
-0.2
478
Normal
-0.2
666
Normal
-0.2
914
Normal
-0.2
447
Tumor
-0.3
221
Tumor
-0.3
523
Tumor
-0.3
944
Normal
-0.3
1013
Tumor
-0.3
1031
Tumor
-0.3
952
Normal
-0.3
975
Tumor
-0.3
813
Tumor
-0.3
528
Normal
-0.3
212
Normal
-0.3
271
Tumor
-0.3
445
Tumor
-0.3
1044
Normal
-0.3
785
Tumor
-0.3
866
Normal
-0.3
462
Normal
-0.3
954
Normal
-0.3
817
Tumor
-0.3
746
Normal
-0.4
863
Tumor
-0.4
786
Normal
-0.4
815
Tumor
-0.4
223
Tumor
-0.4
977
Tumor
-0.4
1015
Tumor
-0.5
498
Normal
-0.5
744
Normal
-0.5
955
Tumor
-0.5
285
Tumor
-0.5
742
Normal
-0.5
471
Tumor
-0.5
1043
Tumor
-0.6
743
Tumor
-0.6
983
Tumor
-0.6
553
Tumor
-0.6
724
Normal
-0.6
982
Normal
-0.6
723
Tumor
-0.7
1016
Normal
-0.7
978
Normal
-0.7
1014
Normal
-0.7
921
Tumor
-0.7
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
