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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.4
nTPM
HPA Brain:
26.2
nTPM
GTEx:
15.4
nTPM
FANTOM5:
18.5
Scaled Tags Per Million
Pig:
24.7
nTPM
Mouse:
13.3
nTPM
Allen mouse:
0.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA007961
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 26.2
1898
Male, age 80, left hemisphere
29.4
2529
Female, age 94, left hemisphere
28.3
2148
Female, age 91, left hemisphere
25.7
1855
Male, age 76, left hemisphere
25.5
1911
Female, age 85, right hemisphere
25.5
2621
Female, age 67, right hemisphere
22.5
Dentate gyrus nTPM: 23.7
2530
Female, age 94, left hemisphere
32.6
2528
Male, age 74, both hemispheres
27.9
2010
Male, age 76, both hemispheres
22.6
2246
Female, age 85, both hemispheres
21.0
1927
Female, age 91, both hemispheres
20.4
2531
Female, age 67, both hemispheres
18.0
Entorhinal gyrus nTPM: 23.3
2117
Female, age 91, right hemisphere
32.1
2764
Male, age 80, right hemisphere
24.1
1938
Female, age 85, left hemisphere
23.8
2613
Female, age 94, left hemisphere
21.6
1787
Male, age 76, left hemisphere
21.1
2686
Male, age 75, right hemisphere
17.4
Hippocampus, CA1 nTPM: 25.2
2527
Male, age 74, both hemispheres
30.1
1873
Female, age 85, both hemispheres
27.4
2749
Male, age 80, left hemisphere
27.1
2082
Female, age 91, right hemisphere
23.2
2045
Male, age 76, both hemispheres
18.4
Hippocampus, CA2 nTPM: 25.5
2249
Male, age 74, both hemispheres
31.5
1963
Male, age 80, left hemisphere
29.4
2113
Female, age 91, right hemisphere
24.3
1940
Female, age 85, left hemisphere
23.2
1892
Male, age 76, both hemispheres
22.9
2437
Female, age 94, left hemisphere
21.8
Hippocampus, CA3 nTPM: 23.7
2436
Male, age 74, both hemispheres
32.7
1891
Female, age 85, both hemispheres
25.2
1867
Male, age 76, both hemispheres
23.0
2137
Male, age 80, left hemisphere
21.4
2620
Female, age 94, left hemisphere
21.3
2861
Female, age 67, both hemispheres
18.9
Parahippocampal cortex nTPM: 20.4
1933
Female, age 85, both hemispheres
23.1
2250
Female, age 67, right hemisphere
21.9
2692
Male, age 74, both hemispheres
21.6
1850
Male, age 80, both hemispheres
21.3
2622
Female, age 67, right hemisphere
20.9
1990
Female, age 91, right hemisphere
20.8
2018
Male, age 76, both hemispheres
20.0
2532
Female, age 72, left hemisphere
19.1
2245
Female, age 91, both hemispheres
18.8
2693
Female, age 94, both hemispheres
16.6
Perirhinal gyrus nTPM: 19.6
1847
Female, age 91, left hemisphere
21.8
1794
Male, age 80, right hemisphere
21.2
1841
Female, age 85, right hemisphere
20.1
2521
Female, age 94, right hemisphere
18.6
2848
Male, age 76, right hemisphere
16.3
Subiculum nTPM: 24.2
2729
Female, age 91, right hemisphere
30.2
2619
Male, age 74, both hemispheres
25.5
1901
Male, age 80, both hemispheres
25.2
2042
Male, age 76, both hemispheres
22.4
1977
Female, age 85, both hemispheres
22.1
2438
Female, age 94, left hemisphere
19.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 15.4
Samples: 197
Max nTPM: 26.5
Min nTPM: 3.1
Std nTPM: 4.8
Median nTPM: 15.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
26.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
26.0
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
25.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
25.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
25.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
25.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
24.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
24.4
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
24.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
24.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
24.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
23.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
23.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
23.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
23.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
23.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
23.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
23.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
23.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
23.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
22.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
22.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
22.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
22.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
21.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
21.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
21.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
20.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
20.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
20.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
20.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
20.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
20.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
19.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
19.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
19.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
19.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
19.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
19.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
19.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
19.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
19.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
19.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
19.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
19.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
19.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
19.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
19.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
19.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
18.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
18.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
18.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
18.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
18.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
18.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
17.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
17.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
17.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
17.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
17.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
17.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
17.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
17.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
17.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
17.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
17.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
16.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
16.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
16.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
16.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
16.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
16.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
16.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
16.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
16.8
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
16.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
16.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
16.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
16.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
16.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
16.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
16.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
16.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
16.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
16.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
16.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
16.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
16.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
15.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
15.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
15.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
15.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
15.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
15.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
15.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
15.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
15.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
15.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
15.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
15.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
15.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
15.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
15.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
15.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
15.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
14.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
14.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
14.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
14.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
14.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
14.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
14.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
14.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
14.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
14.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
14.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
14.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
13.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
13.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
13.8
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
13.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
13.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
13.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
13.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
13.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
13.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
13.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
13.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
13.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
13.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
13.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
13.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
13.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
13.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
12.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
12.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
12.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
12.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
12.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
12.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
12.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
12.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
12.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
12.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
12.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
12.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
12.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
12.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
11.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
11.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
11.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
11.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
11.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
11.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
11.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
11.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
11.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
11.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
11.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
11.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
10.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
10.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
10.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
10.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
10.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
10.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
10.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
10.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
10.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
10.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
10.1
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
10.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
10.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
10.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
10.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
9.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
9.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
9.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
9.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
9.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
9.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
9.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
8.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
8.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
8.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
7.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
7.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
7.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
7.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
6.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
5.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
5.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
5.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
5.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
4.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
3.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 11.4
Samples: 4
Max nTPM: 13.1
Min nTPM: 9.5
Sample A
Male
10.9
Sample B
Male
9.5
Sample C
Female
13.1
Sample D
Female
11.9
Hippocampal formation nTPM: 13.3
Samples: 4
Max nTPM: 15.4
Min nTPM: 11.4
Sample A
Male
12.2
Sample B
Male
11.4
Sample C
Female
14.1
Sample D
Female
15.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.