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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
226.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
146.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
126.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
51.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
222.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
85.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
69.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
2.7
671
Tumor
2.5
877
Tumor
2.5
283
Tumor
2.0
375
Tumor
1.5
311
Tumor
1.1
467
Tumor
1.0
395
Tumor
1.0
863
Tumor
1.0
917
Tumor
0.9
713
Tumor
0.9
217
Tumor
0.9
813
Tumor
0.9
615
Tumor
0.9
421
Tumor
0.8
214
Normal
0.8
141
Tumor
0.8
545
Tumor
0.8
686
Normal
0.8
145
Tumor
0.8
213
Tumor
0.8
861
Tumor
0.8
434
Normal
0.8
223
Tumor
0.8
954
Normal
0.7
665
Tumor
0.7
647
Tumor
0.7
817
Tumor
0.7
463
Tumor
0.7
952
Normal
0.7
468
Normal
0.7
984
Normal
0.7
498
Normal
0.7
365
Tumor
0.7
823
Tumor
0.7
814
Normal
0.7
383
Tumor
0.6
516
Normal
0.6
443
Tumor
0.6
538
Normal
0.5
211
Tumor
0.5
916
Normal
0.5
124
Normal
0.5
515
Tumor
0.5
966
Normal
0.5
956
Normal
0.5
355
Tumor
0.4
958
Normal
0.4
982
Normal
0.4
672
Normal
0.4
188
Normal
0.4
384
Normal
0.4
185
Tumor
0.4
125
Tumor
0.4
685
Tumor
0.4
344
Normal
0.3
955
Tumor
0.3
425
Tumor
0.3
128
Normal
0.3
558
Normal
0.3
422
Normal
0.3
715
Tumor
0.3
488
Normal
0.3
852
Normal
0.3
455
Tumor
0.3
1014
Normal
0.3
161
Tumor
0.3
385
Tumor
0.2
363
Tumor
0.2
366
Normal
0.2
146
Normal
0.2
364
Normal
0.2
356
Normal
0.2
368
Normal
0.2
447
Tumor
0.2
627
Tumor
0.2
135
Tumor
0.2
261
Tumor
0.2
883
Tumor
0.2
433
Tumor
0.2
262
Normal
0.2
1042
Normal
0.2
553
Tumor
0.2
412
Normal
0.2
943
Tumor
0.2
284
Normal
0.2
963
Tumor
0.2
391
Tumor
0.2
478
Normal
0.2
137
Tumor
0.2
111
Normal
0.1
666
Normal
0.1
354
Normal
0.1
1031
Tumor
0.1
497
Tumor
0.1
642
Normal
0.1
297
Tumor
0.1
415
Tumor
0.1
362
Normal
0.1
376
Normal
0.1
1044
Normal
0.1
386
Normal
0.1
186
Normal
0.1
574
Normal
0.0
416
Normal
0.0
535
Tumor
0.0
222
Normal
0.0
1032
Normal
0.0
661
Tumor
0.0
328
Normal
0.0
414
Normal
0.0
918
Normal
0.0
786
Normal
0.0
572
Normal
0.0
187
Tumor
0.0
431
Tumor
0.0
921
Tumor
0.0
922
Normal
0.0
271
Tumor
0.0
473
Tumor
0.0
314
Normal
0.0
312
Normal
0.0
546
Normal
0.0
616
Normal
0.0
743
Tumor
0.0
953
Tumor
0.0
448
Normal
0.0
1025
Tumor
0.0
427
Tumor
0.0
727
Tumor
-0.1
864
Normal
-0.1
258
Normal
-0.1
728
Normal
-0.1
218
Normal
-0.1
286
Normal
-0.1
331
Tumor
-0.1
744
Normal
-0.1
138
Normal
-0.1
428
Normal
-0.1
785
Tumor
-0.1
964
Normal
-0.1
573
Tumor
-0.1
697
Tumor
-0.1
212
Normal
-0.1
636
Normal
-0.1
456
Normal
-0.1
413
Tumor
-0.1
554
Normal
-0.1
195
Tumor
-0.1
224
Normal
-0.1
142
Normal
-0.1
1028
Normal
-0.1
874
Normal
-0.2
662
Normal
-0.2
162
Normal
-0.2
388
Normal
-0.2
277
Tumor
-0.2
352
Normal
-0.2
392
Normal
-0.2
866
Normal
-0.2
862
Normal
-0.2
536
Normal
-0.2
426
Normal
-0.2
444
Normal
-0.2
452
Normal
-0.2
878
Normal
-0.2
1045
Tumor
-0.2
228
Normal
-0.2
432
Normal
-0.2
527
Tumor
-0.2
327
Tumor
-0.2
924
Normal
-0.2
563
Tumor
-0.2
976
Normal
-0.2
723
Tumor
-0.2
367
Tumor
-0.3
232
Normal
-0.3
313
Tumor
-0.3
1022
Normal
-0.3
278
Normal
-0.3
192
Normal
-0.3
474
Normal
-0.3
524
Normal
-0.3
778
Normal
-0.3
912
Normal
-0.3
882
Normal
-0.3
975
Tumor
-0.3
756
Normal
-0.3
528
Normal
-0.3
968
Normal
-0.3
342
Normal
-0.3
738
Normal
-0.3
741
Tumor
-0.3
635
Tumor
-0.3
618
Normal
-0.4
664
Normal
-0.4
394
Normal
-0.4
628
Normal
-0.4
722
Normal
-0.4
873
Tumor
-0.4
483
Tumor
-0.4
818
Normal
-0.4
114
Normal
-0.4
396
Normal
-0.4
737
Tumor
-0.4
881
Tumor
-0.4
172
Normal
-0.4
126
Normal
-0.4
491
Tumor
-0.4
191
Tumor
-0.4
721
Tumor
-0.4
1015
Tumor
-0.4
353
Tumor
-0.4
446
Normal
-0.4
436
Normal
-0.4
332
Normal
-0.4
298
Normal
-0.4
464
Normal
-0.5
617
Tumor
-0.5
714
Normal
-0.5
724
Normal
-0.5
358
Normal
-0.5
983
Tumor
-0.5
196
Normal
-0.5
923
Tumor
-0.5
696
Normal
-0.5
221
Tumor
-0.5
493
Tumor
-0.5
564
Normal
-0.5
387
Tumor
-0.5
472
Normal
-0.5
147
Tumor
-0.5
746
Normal
-0.5
568
Normal
-0.5
867
Tumor
-0.5
857
Tumor
-0.5
965
Tumor
-0.6
113
Tumor
-0.6
944
Normal
-0.6
484
Normal
-0.6
341
Tumor
-0.6
884
Normal
-0.6
567
Tumor
-0.6
914
Normal
-0.6
272
Normal
-0.6
461
Tumor
-0.6
716
Normal
-0.6
938
Normal
-0.6
477
Tumor
-0.6
742
Normal
-0.6
978
Normal
-0.6
641
Tumor
-0.6
925
Tumor
-0.7
445
Tumor
-0.7
816
Normal
-0.7
698
Normal
-0.7
534
Normal
-0.7
361
Tumor
-0.7
868
Normal
-0.7
227
Tumor
-0.7
648
Normal
-0.7
268
Normal
-0.7
1046
Normal
-0.7
471
Tumor
-0.7
957
Tumor
-0.7
937
Tumor
-0.8
1016
Normal
-0.8
915
Tumor
-0.8
127
Tumor
-0.8
526
Normal
-0.8
136
Normal
-0.8
981
Tumor
-0.8
977
Tumor
-0.8
481
Tumor
-0.8
926
Normal
-0.8
513
Tumor
-0.8
1026
Normal
-0.8
1041
Tumor
-0.8
1027
Tumor
-0.8
257
Tumor
-0.9
755
Tumor
-0.9
482
Normal
-0.9
285
Tumor
-0.9
858
Normal
-0.9
1043
Tumor
-0.9
424
Normal
-0.9
435
Tumor
-0.9
148
Normal
-0.9
132
Normal
-0.9
913
Tumor
-0.9
462
Normal
-1.0
494
Normal
-1.0
351
Tumor
-1.0
492
Normal
-1.0
514
Normal
-1.0
1013
Tumor
-1.0
851
Tumor
-1.0
815
Tumor
-1.0
865
Tumor
-1.0
663
Tumor
-1.1
967
Tumor
-1.1
525
Tumor
-1.1
112
Tumor
-1.1
557
Tumor
-1.1
824
Normal
-1.1
466
Normal
-1.1
517
Tumor
-1.1
537
Tumor
-1.2
518
Normal
-1.2
745
Tumor
-1.2
951
Tumor
-1.2
777
Tumor
-1.3
171
Tumor
-1.3
423
Tumor
-1.3
533
Tumor
-1.3
451
Tumor
-1.4
393
Tumor
-1.4
411
Tumor
-1.4
695
Tumor
-1.4
571
Tumor
-1.5
357
Tumor
-1.6
231
Tumor
-1.6
465
Tumor
-1.6
267
Tumor
-1.6
487
Tumor
-1.6
523
Tumor
-1.7
131
Tumor
-1.9
911
Tumor
-1.9
1021
Tumor
-2.0
123
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
