MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:107.8 nTPM
GTEx:9.4 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:1.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 107.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2828 Female, age 72, unknown 133.2
2586 Male, age 75, left hemisphere 98.0
1870 Female, age 42, unknown 97.1
2666 Male, age 74, left hemisphere 85.2
1833 Male, age 53, unknown 73.3
1827 Male, age 72, unknown 70.6
1830 Male, age 51, unknown 68.6
2411 Female, age 72, unknown 53.8
2019 Male, age 18, unknown 35.2
2219 Male, age 76, both hemispheres 26.6
Dorsal raphe nucleus
nTPM: 83.1
2016 Female, age 72, unknown 112.9
1828 Male, age 53, unknown 93.9
2047 Male, age 72, unknown 90.0
2298 Female, age 72, unknown 76.1
2750 Male, age 76, both hemispheres 42.5
Inferior colliculus
nTPM: 81.3
1848 Female, age 42, unknown 114.5
2849 Male, age 72, unknown 104.3
1890 Male, age 53, unknown 56.0
2097 Female, age 72, unknown 50.3
Median raphe nucleus
nTPM: 52.7
2220 Male, age 76, midline 52.7
Periaquaductal grey, anterior
nTPM: 100.1
1947 Male, age 18, unknown 109.1
2502 Female, age 75, unknown 98.9
1795 Male, age 51, unknown 92.1
Periaquaductal grey, dorsal
nTPM: 105.9
1840 Male, age 53, unknown 132.7
2850 Male, age 76, both hemispheres 102.2
2464 Female, age 72, unknown 99.8
1831 Male, age 72, unknown 88.7
Periaquaductal grey, lateral
nTPM: 107.8
2053 Male, age 18, unknown 121.3
2140 Male, age 76, both hemispheres 119.2
2272 Male, age 74, both hemispheres 82.9
Pretectal area
nTPM: 73.3
2825 Male, age 18, unknown 115.8
2407 Male, age 75, both hemispheres 92.3
2316 Male, age 76, right hemisphere 79.5
2667 Female, age 75, unknown 73.5
1944 Female, age 72, unknown 72.7
2224 Female, age 72, unknown 72.4
2273 Male, age 74, both hemispheres 72.4
1815 Male, age 53, unknown 69.6
1817 Female, age 42, unknown 61.1
1816 Male, age 51, unknown 52.0
2007 Male, age 72, unknown 44.4
Red nucleus
nTPM: 65.1
1954 Female, age 42, unknown 100.1
2725 Female, age 75, unknown 86.9
2227 Male, age 72, unknown 73.7
2769 Male, age 72, unknown 73.1
1865 Male, age 51, unknown 70.9
2503 Female, age 72, unknown 62.1
2588 Male, age 74, left hemisphere 59.2
2584 Male, age 75, left hemisphere 57.6
1821 Female, age 72, unknown 56.4
1904 Male, age 53, unknown 56.3
2823 Male, age 76, right hemisphere 46.5
2785 Male, age 18, unknown 38.1
Substantia nigra
nTPM: 66.5
2699 Male, age 18, unknown 98.0
2583 Male, age 75, right hemisphere 97.4
1916 Female, age 42, unknown 79.4
2409 Female, age 72, unknown 69.7
1851 Male, age 51, unknown 60.6
2590 Female, age 75, unknown 59.5
1889 Female, age 72, unknown 58.7
1941 Male, age 53, unknown 55.0
2665 Male, age 74, both hemispheres 44.4
2241 Male, age 72, unknown 42.0
Superior colliculus
nTPM: 74.3
2664 Male, age 75, both hemispheres 97.9
1995 Male, age 72, unknown 93.9
1796 Male, age 53, unknown 88.0
1913 Female, age 42, unknown 80.2
2087 Female, age 72, unknown 75.7
1839 Male, age 51, unknown 74.2
2261 Male, age 18, unknown 72.9
2587 Male, age 74, left hemisphere 61.5
2668 Female, age 75, unknown 55.1
1895 Male, age 76, right hemisphere 43.1
Ventral tegmental area
nTPM: 49.8
1942 Male, age 51, unknown 65.1
1915 Female, age 42, unknown 58.0
2410 Female, age 72, unknown 50.4
2218 Male, age 76, both hemispheres 47.4
2021 Male, age 53, unknown 44.3
2223 Female, age 72, unknown 33.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 52.9
Min nTPM: 0.4
Std nTPM: 8.5
Median nTPM: 7.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 52.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 48.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 34.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 27.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 26.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 21.9
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 21.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 21.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.9
Samples: 4

Max nTPM: 42.0
Min nTPM: 35.4
Sample A Female 39.1
Sample B Female 38.9
Sample C Male 35.4
Sample D Male 42.0
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 84.8
Min nTPM: 10.1
Sample A Female 84.8
Sample B Female 22.8
Sample C Male 25.0
Sample D Male 10.1
Periaqueductal gray
nTPM: 38.4
Samples: 3

Max nTPM: 46.2
Min nTPM: 31.2
Sample B Female 37.8
Sample C Male 46.2
Sample D Male 31.2
Superior colliculi
nTPM: 18.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 10.5
Sample A Female 21.1
Sample B Female 10.5
Sample C Male 20.4
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.5
Min nTPM: 1.5
Sample A Male 1.5
Sample B Male 1.5
Sample C Female 1.5
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69817007 Antisense, RP_050510_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2
71717115 Antisense, RP_050510_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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