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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAT2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
87.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
78.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
69.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
69.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
68.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
67.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
65.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
62.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
60.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
60.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
57.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
52.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
50.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
49.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
49.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
48.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
47.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
47.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
45.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
43.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
42.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
39.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
38.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
33.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
28.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
23.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
21.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
21.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAT2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.8
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
104.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
81.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
80.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
80.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
73.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
66.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
66.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
65.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
64.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
64.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
61.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
58.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
55.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
54.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
54.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
53.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
52.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
51.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
50.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
47.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
45.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
43.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
43.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
43.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
42.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
42.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
39.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
36.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
34.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
34.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
34.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
29.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
353
Tumor
0.9
431
Tumor
0.7
261
Tumor
0.7
981
Tumor
0.6
617
Tumor
0.6
867
Tumor
0.6
695
Tumor
0.6
861
Tumor
0.6
342
Normal
0.5
911
Tumor
0.5
744
Normal
0.5
1013
Tumor
0.5
924
Normal
0.4
1041
Tumor
0.4
112
Tumor
0.4
865
Tumor
0.4
915
Tumor
0.4
557
Tumor
0.4
746
Normal
0.4
741
Tumor
0.4
426
Normal
0.4
698
Normal
0.4
376
Normal
0.4
715
Tumor
0.3
465
Tumor
0.3
742
Normal
0.3
723
Tumor
0.3
1026
Normal
0.3
513
Tumor
0.3
862
Normal
0.3
341
Tumor
0.3
878
Normal
0.3
332
Normal
0.3
818
Normal
0.3
344
Normal
0.3
665
Tumor
0.3
685
Tumor
0.3
925
Tumor
0.3
1014
Normal
0.3
714
Normal
0.3
456
Normal
0.3
186
Normal
0.3
554
Normal
0.3
487
Tumor
0.3
912
Normal
0.3
148
Normal
0.3
977
Tumor
0.3
738
Normal
0.3
298
Normal
0.3
172
Normal
0.3
952
Normal
0.3
955
Tumor
0.3
517
Tumor
0.3
756
Normal
0.2
436
Normal
0.2
1022
Normal
0.2
146
Normal
0.2
123
Tumor
0.2
1046
Normal
0.2
388
Normal
0.2
128
Normal
0.2
922
Normal
0.2
938
Normal
0.2
222
Normal
0.2
452
Normal
0.2
196
Normal
0.2
954
Normal
0.2
354
Normal
0.2
914
Normal
0.2
716
Normal
0.2
358
Normal
0.2
448
Normal
0.2
366
Normal
0.2
636
Normal
0.2
314
Normal
0.2
278
Normal
0.2
446
Normal
0.2
414
Normal
0.2
352
Normal
0.2
147
Tumor
0.2
422
Normal
0.2
162
Normal
0.2
944
Normal
0.2
984
Normal
0.2
142
Normal
0.2
161
Tumor
0.2
432
Normal
0.2
466
Normal
0.2
696
Normal
0.2
618
Normal
0.2
864
Normal
0.2
882
Normal
0.2
866
Normal
0.2
394
Normal
0.2
443
Tumor
0.2
648
Normal
0.2
132
Normal
0.2
392
Normal
0.2
858
Normal
0.2
956
Normal
0.2
214
Normal
0.2
546
Normal
0.2
137
Tumor
0.2
786
Normal
0.2
218
Normal
0.2
572
Normal
0.2
114
Normal
0.2
728
Normal
0.2
473
Tumor
0.2
488
Normal
0.2
412
Normal
0.2
616
Normal
0.2
534
Normal
0.2
232
Normal
0.2
778
Normal
0.2
258
Normal
0.2
926
Normal
0.2
185
Tumor
0.2
647
Tumor
0.1
642
Normal
0.1
328
Normal
0.1
127
Tumor
0.1
428
Normal
0.1
111
Normal
0.1
662
Normal
0.1
1032
Normal
0.1
824
Normal
0.1
937
Tumor
0.1
538
Normal
0.1
356
Normal
0.1
113
Tumor
0.1
464
Normal
0.1
481
Tumor
0.1
413
Tumor
0.1
1044
Normal
0.1
966
Normal
0.1
451
Tumor
0.1
384
Normal
0.1
686
Normal
0.1
424
Normal
0.1
1016
Normal
0.1
553
Tumor
0.1
664
Normal
0.1
672
Normal
0.1
515
Tumor
0.1
568
Normal
0.1
272
Normal
0.1
231
Tumor
0.1
518
Normal
0.1
1021
Tumor
0.1
883
Tumor
0.1
484
Normal
0.1
416
Normal
0.1
223
Tumor
0.1
131
Tumor
0.1
816
Normal
0.1
312
Normal
0.1
516
Normal
0.1
755
Tumor
0.1
368
Normal
0.1
362
Normal
0.1
138
Normal
0.1
396
Normal
0.1
468
Normal
0.1
435
Tumor
0.1
722
Normal
0.1
1028
Normal
0.1
423
Tumor
0.1
873
Tumor
0.1
482
Normal
0.1
721
Tumor
0.1
411
Tumor
0.1
364
Normal
0.1
228
Normal
0.1
874
Normal
0.1
666
Normal
0.0
982
Normal
0.0
284
Normal
0.0
191
Tumor
0.0
1042
Normal
0.0
472
Normal
0.0
918
Normal
0.0
462
Normal
0.0
124
Normal
0.0
213
Tumor
0.0
1043
Tumor
0.0
1027
Tumor
0.0
745
Tumor
0.0
415
Tumor
0.0
1031
Tumor
0.0
262
Normal
0.0
641
Tumor
0.0
913
Tumor
0.0
1045
Tumor
0.0
212
Normal
0.0
558
Normal
0.0
628
Normal
0.0
277
Tumor
0.0
964
Normal
0.0
136
Normal
0.0
528
Normal
0.0
526
Normal
0.0
574
Normal
0.0
434
Normal
0.0
884
Normal
0.0
978
Normal
0.0
868
Normal
0.0
188
Normal
0.0
145
Tumor
0.0
268
Normal
0.0
527
Tumor
0.0
224
Normal
0.0
951
Tumor
0.0
386
Normal
0.0
785
Tumor
0.0
564
Normal
0.0
327
Tumor
0.0
433
Tumor
0.0
474
Normal
0.0
494
Normal
0.0
968
Normal
0.0
286
Normal
0.0
852
Normal
0.0
217
Tumor
0.0
857
Tumor
0.0
627
Tumor
0.0
514
Normal
0.0
195
Tumor
0.0
483
Tumor
0.0
221
Tumor
-0.1
171
Tumor
-0.1
777
Tumor
-0.1
383
Tumor
-0.1
958
Normal
-0.1
467
Tumor
-0.1
635
Tumor
-0.1
126
Normal
-0.1
187
Tumor
-0.1
141
Tumor
-0.1
477
Tumor
-0.1
615
Tumor
-0.1
524
Normal
-0.1
976
Normal
-0.1
387
Tumor
-0.1
391
Tumor
-0.1
963
Tumor
-0.1
571
Tumor
-0.1
965
Tumor
-0.1
537
Tumor
-0.1
135
Tumor
-0.1
737
Tumor
-0.1
492
Normal
-0.1
953
Tumor
-0.1
444
Normal
-0.1
395
Tumor
-0.1
916
Normal
-0.1
267
Tumor
-0.1
523
Tumor
-0.1
471
Tumor
-0.1
192
Normal
-0.1
563
Tumor
-0.1
497
Tumor
-0.1
823
Tumor
-0.1
498
Normal
-0.1
478
Normal
-0.1
331
Tumor
-0.2
727
Tumor
-0.2
863
Tumor
-0.2
357
Tumor
-0.2
355
Tumor
-0.2
536
Normal
-0.2
313
Tumor
-0.2
361
Tumor
-0.2
663
Tumor
-0.2
425
Tumor
-0.2
493
Tumor
-0.2
257
Tumor
-0.2
271
Tumor
-0.2
427
Tumor
-0.2
375
Tumor
-0.2
975
Tumor
-0.2
297
Tumor
-0.2
923
Tumor
-0.2
211
Tumor
-0.3
533
Tumor
-0.3
445
Tumor
-0.3
724
Normal
-0.3
877
Tumor
-0.3
983
Tumor
-0.3
365
Tumor
-0.3
525
Tumor
-0.3
813
Tumor
-0.3
285
Tumor
-0.3
851
Tumor
-0.3
1015
Tumor
-0.3
1025
Tumor
-0.4
921
Tumor
-0.4
393
Tumor
-0.4
967
Tumor
-0.4
491
Tumor
-0.4
881
Tumor
-0.4
957
Tumor
-0.4
814
Normal
-0.4
463
Tumor
-0.4
567
Tumor
-0.4
743
Tumor
-0.4
447
Tumor
-0.4
421
Tumor
-0.5
535
Tumor
-0.5
661
Tumor
-0.5
817
Tumor
-0.5
455
Tumor
-0.5
545
Tumor
-0.5
227
Tumor
-0.5
311
Tumor
-0.5
815
Tumor
-0.5
461
Tumor
-0.5
367
Tumor
-0.5
351
Tumor
-0.5
671
Tumor
-0.6
713
Tumor
-0.6
385
Tumor
-0.6
917
Tumor
-0.6
343
Tumor
-0.6
363
Tumor
-0.6
283
Tumor
-0.6
697
Tumor
-0.7
943
Tumor
-0.7
573
Tumor
-0.7
125
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.