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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PI4K2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PI4K2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO45213
0 years, male, NA, stage:1, alive, 1200 days
78.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
60.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
55.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
48.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
43.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
36.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
34.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
0.9
568
Normal
0.7
981
Tumor
0.7
564
Normal
0.6
128
Normal
0.6
1014
Normal
0.6
114
Normal
0.6
862
Normal
0.6
648
Normal
0.6
147
Tumor
0.6
161
Tumor
0.6
572
Normal
0.6
866
Normal
0.6
465
Tumor
0.6
864
Normal
0.6
446
Normal
0.5
636
Normal
0.5
964
Normal
0.5
232
Normal
0.5
738
Normal
0.5
358
Normal
0.5
436
Normal
0.5
664
Normal
0.5
868
Normal
0.4
741
Tumor
0.4
356
Normal
0.4
431
Tumor
0.4
1025
Tumor
0.4
277
Tumor
0.4
616
Normal
0.4
448
Normal
0.4
231
Tumor
0.4
1046
Normal
0.4
262
Normal
0.4
867
Tumor
0.4
958
Normal
0.4
227
Tumor
0.4
428
Normal
0.4
361
Tumor
0.4
627
Tumor
0.4
395
Tumor
0.4
123
Tumor
0.4
112
Tumor
0.4
342
Normal
0.4
228
Normal
0.4
922
Normal
0.4
393
Tumor
0.4
354
Normal
0.4
145
Tumor
0.4
278
Normal
0.4
615
Tumor
0.4
743
Tumor
0.4
666
Normal
0.4
344
Normal
0.4
824
Normal
0.4
823
Tumor
0.4
861
Tumor
0.4
452
Normal
0.4
111
Normal
0.4
813
Tumor
0.4
272
Normal
0.4
976
Normal
0.4
432
Normal
0.4
426
Normal
0.3
222
Normal
0.3
126
Normal
0.3
132
Normal
0.3
414
Normal
0.3
574
Normal
0.3
474
Normal
0.3
171
Tumor
0.3
618
Normal
0.3
982
Normal
0.3
1044
Normal
0.3
546
Normal
0.3
462
Normal
0.3
912
Normal
0.3
968
Normal
0.3
413
Tumor
0.3
698
Normal
0.3
984
Normal
0.3
926
Normal
0.3
352
Normal
0.3
162
Normal
0.3
914
Normal
0.3
258
Normal
0.3
314
Normal
0.3
424
Normal
0.3
312
Normal
0.3
482
Normal
0.3
915
Tumor
0.3
124
Normal
0.3
814
Normal
0.3
742
Normal
0.3
213
Tumor
0.3
882
Normal
0.3
422
Normal
0.3
187
Tumor
0.3
534
Normal
0.3
313
Tumor
0.3
662
Normal
0.3
298
Normal
0.3
728
Normal
0.3
196
Normal
0.3
672
Normal
0.3
421
Tumor
0.3
514
Normal
0.3
714
Normal
0.3
172
Normal
0.3
481
Tumor
0.3
938
Normal
0.3
148
Normal
0.3
191
Tumor
0.3
388
Normal
0.2
967
Tumor
0.2
978
Normal
0.2
186
Normal
0.2
724
Normal
0.2
411
Tumor
0.2
328
Normal
0.2
484
Normal
0.2
423
Tumor
0.2
188
Normal
0.2
924
Normal
0.2
944
Normal
0.2
524
Normal
0.2
528
Normal
0.2
722
Normal
0.2
113
Tumor
0.2
435
Tumor
0.2
138
Normal
0.2
362
Normal
0.2
558
Normal
0.2
427
Tumor
0.2
628
Normal
0.2
953
Tumor
0.2
214
Normal
0.2
526
Normal
0.2
557
Tumor
0.2
1016
Normal
0.2
468
Normal
0.2
136
Normal
0.2
286
Normal
0.2
212
Normal
0.2
737
Tumor
0.2
488
Normal
0.2
385
Tumor
0.2
412
Normal
0.2
746
Normal
0.2
494
Normal
0.2
518
Normal
0.2
444
Normal
0.2
1043
Tumor
0.2
464
Normal
0.2
554
Normal
0.2
745
Tumor
0.2
332
Normal
0.2
366
Normal
0.2
858
Normal
0.2
127
Tumor
0.2
716
Normal
0.2
818
Normal
0.2
376
Normal
0.2
918
Normal
0.1
884
Normal
0.1
727
Tumor
0.1
642
Normal
0.1
218
Normal
0.1
217
Tumor
0.1
257
Tumor
0.1
1042
Normal
0.1
852
Normal
0.1
641
Tumor
0.1
357
Tumor
0.1
874
Normal
0.1
434
Normal
0.1
697
Tumor
0.1
723
Tumor
0.1
433
Tumor
0.1
297
Tumor
0.1
873
Tumor
0.1
195
Tumor
0.1
386
Normal
0.1
142
Normal
0.1
394
Normal
0.1
268
Normal
0.1
125
Tumor
0.1
267
Tumor
0.1
284
Normal
0.1
516
Normal
0.1
365
Tumor
0.1
224
Normal
0.1
487
Tumor
0.1
261
Tumor
0.1
146
Normal
0.1
375
Tumor
0.1
1032
Normal
0.1
472
Normal
0.1
396
Normal
0.1
816
Normal
0.1
911
Tumor
0.1
353
Tumor
0.0
878
Normal
0.0
1022
Normal
0.0
966
Normal
0.0
192
Normal
0.0
364
Normal
0.0
392
Normal
0.0
185
Tumor
0.0
425
Tumor
0.0
686
Normal
0.0
456
Normal
0.0
1013
Tumor
0.0
695
Tumor
0.0
954
Normal
0.0
786
Normal
0.0
857
Tumor
0.0
271
Tumor
0.0
956
Normal
0.0
1027
Tumor
0.0
1026
Normal
0.0
756
Normal
0.0
665
Tumor
0.0
815
Tumor
0.0
851
Tumor
0.0
368
Normal
0.0
567
Tumor
0.0
538
Normal
0.0
916
Normal
0.0
384
Normal
0.0
141
Tumor
0.0
952
Normal
-0.1
137
Tumor
-0.1
477
Tumor
-0.1
478
Normal
-0.1
1045
Tumor
-0.1
1028
Normal
-0.1
466
Normal
-0.1
923
Tumor
-0.1
744
Normal
-0.1
445
Tumor
-0.1
416
Normal
-0.1
391
Tumor
-0.1
221
Tumor
-0.1
696
Normal
-0.1
363
Tumor
-0.1
135
Tumor
-0.1
443
Tumor
-0.1
387
Tumor
-0.2
715
Tumor
-0.2
721
Tumor
-0.2
963
Tumor
-0.2
493
Tumor
-0.2
883
Tumor
-0.2
755
Tumor
-0.2
383
Tumor
-0.2
951
Tumor
-0.2
778
Normal
-0.2
1031
Tumor
-0.2
471
Tumor
-0.2
327
Tumor
-0.2
461
Tumor
-0.2
492
Normal
-0.2
498
Normal
-0.2
817
Tumor
-0.2
367
Tumor
-0.2
863
Tumor
-0.2
553
Tumor
-0.2
355
Tumor
-0.3
536
Normal
-0.3
943
Tumor
-0.3
491
Tumor
-0.3
1041
Tumor
-0.3
513
Tumor
-0.3
647
Tumor
-0.3
525
Tumor
-0.3
533
Tumor
-0.3
955
Tumor
-0.3
223
Tumor
-0.3
517
Tumor
-0.4
937
Tumor
-0.4
311
Tumor
-0.4
331
Tumor
-0.4
965
Tumor
-0.4
921
Tumor
-0.4
877
Tumor
-0.4
913
Tumor
-0.4
451
Tumor
-0.4
635
Tumor
-0.4
881
Tumor
-0.4
515
Tumor
-0.4
957
Tumor
-0.4
977
Tumor
-0.4
483
Tumor
-0.4
351
Tumor
-0.4
785
Tumor
-0.5
285
Tumor
-0.5
341
Tumor
-0.5
663
Tumor
-0.5
685
Tumor
-0.5
1021
Tumor
-0.5
777
Tumor
-0.5
537
Tumor
-0.5
343
Tumor
-0.5
917
Tumor
-0.5
713
Tumor
-0.6
617
Tumor
-0.6
473
Tumor
-0.6
283
Tumor
-0.6
523
Tumor
-0.6
211
Tumor
-0.6
415
Tumor
-0.6
497
Tumor
-0.6
573
Tumor
-0.6
925
Tumor
-0.7
447
Tumor
-0.7
563
Tumor
-0.7
131
Tumor
-0.8
463
Tumor
-0.9
527
Tumor
-0.9
545
Tumor
-0.9
661
Tumor
-1.0
467
Tumor
-1.0
865
Tumor
-1.1
975
Tumor
-1.1
455
Tumor
-1.2
1015
Tumor
-1.4
983
Tumor
-1.5
671
Tumor
-1.7
535
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
