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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OTC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
320.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
287.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
276.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
274.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
259.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
245.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
233.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
200.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
191.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
191.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
189.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
189.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
186.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
183.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
181.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
180.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
180.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
179.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
176.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
176.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
174.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
172.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
169.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
166.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
161.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
159.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
159.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
159.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
158.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
157.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
157.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
148.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
145.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
145.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
144.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
141.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
139.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
137.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
136.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
136.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
136.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
135.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
134.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
134.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
134.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
134.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
131.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
130.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
128.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
127.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
127.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
125.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
124.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
124.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
124.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
123.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
122.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
120.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
120.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
117.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
117.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
116.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
115.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
114.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
114.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
114.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
113.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
113.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
113.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
112.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
110.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
109.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
109.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
109.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
109.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
108.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
107.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
107.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
107.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
107.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
106.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
105.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
105.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
105.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
103.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
102.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
100.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
100.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
98.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
97.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
96.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
94.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
94.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
94.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
93.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
93.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
93.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
92.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
92.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
92.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
91.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
91.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
91.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
90.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
89.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
89.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
88.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
88.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
87.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
86.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
86.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
84.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
83.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
82.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
82.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
82.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
82.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
81.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
81.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
80.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
79.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
79.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
79.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
79.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
78.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
77.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
77.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
76.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
76.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
75.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
74.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
72.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
71.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
71.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
70.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
69.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
69.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
69.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
68.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
68.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
68.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
67.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
65.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
65.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
65.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
64.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
64.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
64.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
63.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
63.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
61.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
60.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
60.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
58.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
58.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
57.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
57.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
57.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
56.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
56.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
56.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
55.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
55.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
54.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
54.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
53.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
53.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
53.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
49.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
49.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
49.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
48.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
47.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
46.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
45.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
45.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
45.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
45.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
44.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
44.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
44.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
43.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
41.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
41.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
39.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
39.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
39.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
38.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
32.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
25.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OTC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.8
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
338.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
325.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
280.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
267.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
255.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
245.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
233.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
217.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
214.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
209.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
206.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
200.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
191.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
172.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
171.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
163.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
163.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
155.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
155.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
154.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
153.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
153.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
149.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
147.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
141.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
141.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
139.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
139.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
139.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
138.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
137.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
136.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
136.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
132.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
132.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
131.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
130.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
126.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
125.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
125.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
124.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
122.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
122.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
120.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
119.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
118.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
117.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
115.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
113.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
111.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
108.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
105.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
102.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
102.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
101.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
97.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
97.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
95.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
93.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
92.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
91.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
91.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
91.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
89.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
86.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
86.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
86.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
85.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
84.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
84.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
84.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
81.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
80.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
78.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
77.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
76.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
76.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
75.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
75.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
75.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
74.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
73.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
71.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
71.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
70.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
70.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
69.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
68.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
68.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
66.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
66.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
65.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
60.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
60.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
59.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
59.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
59.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
57.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
55.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
55.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
55.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
52.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
50.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
49.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
47.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
47.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
47.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
41.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
39.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
37.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
37.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
35.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
33.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.4
627
Tumor
1.4
452
Normal
1.0
1045
Tumor
1.0
981
Tumor
0.9
128
Normal
0.9
636
Normal
0.9
698
Normal
0.8
1027
Tumor
0.7
465
Tumor
0.7
648
Normal
0.7
172
Normal
0.7
616
Normal
0.7
738
Normal
0.7
742
Normal
0.7
851
Tumor
0.7
746
Normal
0.7
278
Normal
0.7
513
Tumor
0.7
214
Normal
0.7
426
Normal
0.7
864
Normal
0.6
1022
Normal
0.6
1032
Normal
0.6
568
Normal
0.6
914
Normal
0.6
564
Normal
0.6
448
Normal
0.6
915
Tumor
0.6
925
Tumor
0.6
744
Normal
0.6
462
Normal
0.6
196
Normal
0.6
911
Tumor
0.6
422
Normal
0.6
132
Normal
0.6
868
Normal
0.6
388
Normal
0.6
1043
Tumor
0.6
618
Normal
0.6
114
Normal
0.6
272
Normal
0.6
162
Normal
0.6
414
Normal
0.6
862
Normal
0.6
1044
Normal
0.6
228
Normal
0.6
642
Normal
0.6
358
Normal
0.6
494
Normal
0.6
722
Normal
0.5
186
Normal
0.5
786
Normal
0.5
723
Tumor
0.5
534
Normal
0.5
416
Normal
0.5
912
Normal
0.5
728
Normal
0.5
824
Normal
0.5
332
Normal
0.5
477
Tumor
0.5
468
Normal
0.5
976
Normal
0.5
816
Normal
0.5
232
Normal
0.5
446
Normal
0.5
436
Normal
0.5
982
Normal
0.5
852
Normal
0.5
756
Normal
0.5
212
Normal
0.5
1042
Normal
0.5
258
Normal
0.5
696
Normal
0.5
924
Normal
0.5
428
Normal
0.5
138
Normal
0.5
113
Tumor
0.5
356
Normal
0.5
342
Normal
0.5
261
Tumor
0.5
944
Normal
0.5
727
Tumor
0.5
354
Normal
0.5
558
Normal
0.5
366
Normal
0.5
686
Normal
0.5
424
Normal
0.5
466
Normal
0.5
572
Normal
0.5
314
Normal
0.5
112
Tumor
0.5
362
Normal
0.5
1041
Tumor
0.5
514
Normal
0.4
484
Normal
0.4
1028
Normal
0.4
866
Normal
0.4
363
Tumor
0.4
148
Normal
0.4
557
Tumor
0.4
546
Normal
0.4
126
Normal
0.4
432
Normal
0.4
922
Normal
0.4
298
Normal
0.4
412
Normal
0.4
628
Normal
0.4
284
Normal
0.4
328
Normal
0.4
394
Normal
0.4
312
Normal
0.4
516
Normal
0.4
964
Normal
0.4
464
Normal
0.4
376
Normal
0.4
111
Normal
0.4
488
Normal
0.4
662
Normal
0.4
262
Normal
0.4
1016
Normal
0.4
716
Normal
0.4
714
Normal
0.4
882
Normal
0.4
528
Normal
0.3
954
Normal
0.3
136
Normal
0.3
474
Normal
0.3
188
Normal
0.3
222
Normal
0.3
818
Normal
0.3
918
Normal
0.3
574
Normal
0.3
145
Tumor
0.3
1026
Normal
0.3
874
Normal
0.3
341
Tumor
0.3
538
Normal
0.3
352
Normal
0.3
955
Tumor
0.3
956
Normal
0.3
778
Normal
0.3
978
Normal
0.3
286
Normal
0.3
984
Normal
0.3
1046
Normal
0.3
966
Normal
0.3
968
Normal
0.3
142
Normal
0.3
1014
Normal
0.3
268
Normal
0.3
482
Normal
0.3
364
Normal
0.3
647
Tumor
0.3
883
Tumor
0.3
431
Tumor
0.3
127
Tumor
0.3
884
Normal
0.2
858
Normal
0.2
873
Tumor
0.2
526
Normal
0.2
386
Normal
0.2
554
Normal
0.2
472
Normal
0.2
384
Normal
0.2
916
Normal
0.2
938
Normal
0.2
958
Normal
0.2
124
Normal
0.2
146
Normal
0.2
218
Normal
0.2
396
Normal
0.2
456
Normal
0.2
434
Normal
0.2
444
Normal
0.2
926
Normal
0.2
392
Normal
0.2
952
Normal
0.2
411
Tumor
0.2
368
Normal
0.2
878
Normal
0.1
672
Normal
0.1
191
Tumor
0.1
666
Normal
0.1
563
Tumor
0.1
478
Normal
0.1
171
Tumor
0.1
518
Normal
0.1
344
Normal
0.1
861
Tumor
0.1
695
Tumor
0.1
755
Tumor
0.1
741
Tumor
0.1
415
Tumor
0.1
867
Tumor
0.1
224
Normal
0.0
721
Tumor
0.0
481
Tumor
0.0
137
Tumor
0.0
435
Tumor
0.0
421
Tumor
0.0
483
Tumor
-0.1
365
Tumor
-0.1
393
Tumor
-0.1
492
Normal
-0.1
664
Normal
-0.1
713
Tumor
-0.1
524
Normal
-0.1
231
Tumor
-0.1
187
Tumor
-0.2
785
Tumor
-0.2
571
Tumor
-0.2
423
Tumor
-0.2
615
Tumor
-0.2
777
Tumor
-0.2
353
Tumor
-0.2
937
Tumor
-0.2
451
Tumor
-0.3
192
Normal
-0.3
227
Tumor
-0.3
147
Tumor
-0.3
536
Normal
-0.3
635
Tumor
-0.3
185
Tumor
-0.3
445
Tumor
-0.3
498
Normal
-0.3
195
Tumor
-0.4
433
Tumor
-0.4
471
Tumor
-0.4
123
Tumor
-0.5
715
Tumor
-0.5
921
Tumor
-0.5
413
Tumor
-0.5
857
Tumor
-0.5
217
Tumor
-0.5
361
Tumor
-0.5
473
Tumor
-0.5
493
Tumor
-0.5
443
Tumor
-0.5
913
Tumor
-0.5
141
Tumor
-0.6
641
Tumor
-0.6
267
Tumor
-0.6
447
Tumor
-0.6
1013
Tumor
-0.6
665
Tumor
-0.7
617
Tumor
-0.7
515
Tumor
-0.7
823
Tumor
-0.7
467
Tumor
-0.7
461
Tumor
-0.7
357
Tumor
-0.8
865
Tumor
-0.8
1015
Tumor
-0.8
327
Tumor
-0.8
863
Tumor
-0.8
963
Tumor
-0.8
161
Tumor
-0.8
953
Tumor
-0.9
814
Normal
-0.9
257
Tumor
-0.9
977
Tumor
-0.9
313
Tumor
-0.9
567
Tumor
-0.9
1031
Tumor
-1.0
881
Tumor
-1.0
297
Tumor
-1.0
391
Tumor
-1.0
685
Tumor
-1.1
387
Tumor
-1.1
943
Tumor
-1.1
213
Tumor
-1.1
724
Normal
-1.1
277
Tumor
-1.2
923
Tumor
-1.2
355
Tumor
-1.2
375
Tumor
-1.2
1021
Tumor
-1.2
917
Tumor
-1.2
491
Tumor
-1.3
815
Tumor
-1.4
813
Tumor
-1.4
533
Tumor
-1.4
957
Tumor
-1.4
537
Tumor
-1.4
737
Tumor
-1.5
455
Tumor
-1.5
463
Tumor
-1.5
383
Tumor
-1.5
527
Tumor
-1.6
131
Tumor
-1.6
125
Tumor
-1.6
517
Tumor
-1.6
135
Tumor
-1.6
975
Tumor
-1.7
967
Tumor
-1.7
697
Tumor
-1.7
427
Tumor
-1.7
223
Tumor
-1.8
983
Tumor
-1.8
951
Tumor
-1.8
877
Tumor
-1.8
311
Tumor
-1.8
221
Tumor
-1.8
663
Tumor
-1.8
395
Tumor
-1.9
425
Tumor
-1.9
271
Tumor
-1.9
1025
Tumor
-1.9
343
Tumor
-1.9
965
Tumor
-1.9
331
Tumor
-1.9
523
Tumor
-2.0
487
Tumor
-2.0
351
Tumor
-2.1
553
Tumor
-2.1
525
Tumor
-2.1
671
Tumor
-2.2
573
Tumor
-2.2
367
Tumor
-2.2
817
Tumor
-2.2
385
Tumor
-2.3
743
Tumor
-2.4
497
Tumor
-2.4
545
Tumor
-2.4
661
Tumor
-2.4
211
Tumor
-2.5
535
Tumor
-2.5
283
Tumor
-2.5
285
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.