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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBC1D23 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBC1D23 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.0
351
Tumor
1.0
567
Tumor
0.8
395
Tumor
0.6
745
Tumor
0.6
727
Tumor
0.6
724
Normal
0.6
227
Tumor
0.5
851
Tumor
0.5
517
Tumor
0.5
1027
Tumor
0.5
741
Tumor
0.5
125
Tumor
0.5
1013
Tumor
0.4
537
Tumor
0.4
523
Tumor
0.4
647
Tumor
0.4
257
Tumor
0.4
913
Tumor
0.4
925
Tumor
0.4
285
Tumor
0.4
471
Tumor
0.4
615
Tumor
0.4
533
Tumor
0.4
815
Tumor
0.4
411
Tumor
0.4
953
Tumor
0.4
715
Tumor
0.4
877
Tumor
0.4
445
Tumor
0.3
525
Tumor
0.3
1041
Tumor
0.3
123
Tumor
0.3
497
Tumor
0.3
777
Tumor
0.3
477
Tumor
0.3
473
Tumor
0.3
443
Tumor
0.3
921
Tumor
0.3
147
Tumor
0.3
977
Tumor
0.3
491
Tumor
0.3
451
Tumor
0.3
923
Tumor
0.3
327
Tumor
0.3
545
Tumor
0.3
515
Tumor
0.3
375
Tumor
0.3
431
Tumor
0.2
627
Tumor
0.2
937
Tumor
0.2
663
Tumor
0.2
553
Tumor
0.2
911
Tumor
0.2
1043
Tumor
0.2
171
Tumor
0.2
365
Tumor
0.2
617
Tumor
0.2
283
Tumor
0.2
527
Tumor
0.2
387
Tumor
0.2
137
Tumor
0.2
861
Tumor
0.2
271
Tumor
0.2
981
Tumor
0.2
915
Tumor
0.2
737
Tumor
0.2
231
Tumor
0.2
951
Tumor
0.2
1015
Tumor
0.2
513
Tumor
0.2
665
Tumor
0.2
965
Tumor
0.2
957
Tumor
0.2
883
Tumor
0.2
433
Tumor
0.2
1021
Tumor
0.1
461
Tumor
0.1
983
Tumor
0.1
813
Tumor
0.1
353
Tumor
0.1
492
Normal
0.1
713
Tumor
0.1
131
Tumor
0.1
357
Tumor
0.1
697
Tumor
0.1
393
Tumor
0.1
195
Tumor
0.1
563
Tumor
0.1
746
Normal
0.1
616
Normal
0.1
435
Tumor
0.1
483
Tumor
0.1
383
Tumor
0.1
641
Tumor
0.1
313
Tumor
0.1
211
Tumor
0.1
1045
Tumor
0.1
695
Tumor
0.1
538
Normal
0.1
1025
Tumor
0.1
817
Tumor
0.1
778
Normal
0.1
526
Normal
0.1
145
Tumor
0.1
755
Tumor
0.1
427
Tumor
0.0
484
Normal
0.0
738
Normal
0.0
963
Tumor
0.0
952
Normal
0.0
917
Tumor
0.0
172
Normal
0.0
421
Tumor
0.0
554
Normal
0.0
628
Normal
0.0
964
Normal
0.0
447
Tumor
0.0
1031
Tumor
0.0
518
Normal
0.0
863
Tumor
0.0
463
Tumor
0.0
743
Tumor
0.0
423
Tumor
0.0
721
Tumor
0.0
141
Tumor
0.0
286
Normal
0.0
391
Tumor
0.0
148
Normal
0.0
516
Normal
0.0
493
Tumor
0.0
481
Tumor
0.0
355
Tumor
0.0
341
Tumor
0.0
161
Tumor
0.0
162
Normal
0.0
786
Normal
0.0
113
Tumor
0.0
881
Tumor
0.0
756
Normal
0.0
467
Tumor
0.0
524
Normal
0.0
557
Tumor
0.0
514
Normal
0.0
873
Tumor
0.0
636
Normal
0.0
465
Tumor
0.0
968
Normal
0.0
685
Tumor
0.0
966
Normal
0.0
742
Normal
0.0
188
Normal
0.0
396
Normal
0.0
186
Normal
0.0
412
Normal
0.0
976
Normal
0.0
1014
Normal
0.0
228
Normal
0.0
284
Normal
0.0
696
Normal
0.0
474
Normal
0.0
268
Normal
-0.1
127
Tumor
-0.1
367
Tumor
-0.1
425
Tumor
-0.1
534
Normal
-0.1
698
Normal
-0.1
187
Tumor
-0.1
866
Normal
-0.1
446
Normal
-0.1
472
Normal
-0.1
462
Normal
-0.1
573
Tumor
-0.1
343
Tumor
-0.1
363
Tumor
-0.1
212
Normal
-0.1
728
Normal
-0.1
221
Tumor
-0.1
224
Normal
-0.1
722
Normal
-0.1
488
Normal
-0.1
478
Normal
-0.1
498
Normal
-0.1
1028
Normal
-0.1
912
Normal
-0.1
135
Tumor
-0.1
723
Tumor
-0.1
648
Normal
-0.1
191
Tumor
-0.1
261
Tumor
-0.1
223
Tumor
-0.1
924
Normal
-0.1
686
Normal
-0.1
1016
Normal
-0.1
661
Tumor
-0.1
714
Normal
-0.1
867
Tumor
-0.1
943
Tumor
-0.1
444
Normal
-0.1
218
Normal
-0.1
536
Normal
-0.1
428
Normal
-0.1
415
Tumor
-0.1
874
Normal
-0.1
1026
Normal
-0.1
362
Normal
-0.1
111
Normal
-0.1
868
Normal
-0.1
142
Normal
-0.1
482
Normal
-0.1
823
Tumor
-0.1
448
Normal
-0.1
978
Normal
-0.1
664
Normal
-0.1
494
Normal
-0.1
956
Normal
-0.1
361
Tumor
-0.1
918
Normal
-0.1
185
Tumor
-0.1
232
Normal
-0.1
392
Normal
-0.1
217
Tumor
-0.1
914
Normal
-0.1
487
Tumor
-0.1
342
Normal
-0.1
916
Normal
-0.1
558
Normal
-0.1
311
Tumor
-0.1
642
Normal
-0.1
434
Normal
-0.1
984
Normal
-0.1
662
Normal
-0.1
114
Normal
-0.1
436
Normal
-0.2
922
Normal
-0.2
426
Normal
-0.2
368
Normal
-0.2
716
Normal
-0.2
385
Tumor
-0.2
416
Normal
-0.2
432
Normal
-0.2
356
Normal
-0.2
344
Normal
-0.2
958
Normal
-0.2
982
Normal
-0.2
944
Normal
-0.2
546
Normal
-0.2
394
Normal
-0.2
354
Normal
-0.2
262
Normal
-0.2
414
Normal
-0.2
535
Tumor
-0.2
213
Tumor
-0.2
376
Normal
-0.2
455
Tumor
-0.2
864
Normal
-0.2
258
Normal
-0.2
358
Normal
-0.2
386
Normal
-0.2
124
Normal
-0.2
277
Tumor
-0.2
618
Normal
-0.2
814
Normal
-0.2
785
Tumor
-0.2
572
Normal
-0.2
328
Normal
-0.2
452
Normal
-0.2
388
Normal
-0.2
884
Normal
-0.2
297
Tumor
-0.2
146
Normal
-0.2
528
Normal
-0.2
331
Tumor
-0.2
571
Tumor
-0.2
364
Normal
-0.2
878
Normal
-0.2
424
Normal
-0.2
975
Tumor
-0.2
128
Normal
-0.2
938
Normal
-0.2
466
Normal
-0.2
126
Normal
-0.2
1044
Normal
-0.2
138
Normal
-0.2
468
Normal
-0.2
666
Normal
-0.2
954
Normal
-0.2
672
Normal
-0.2
464
Normal
-0.2
1022
Normal
-0.2
422
Normal
-0.2
882
Normal
-0.2
214
Normal
-0.2
352
Normal
-0.2
568
Normal
-0.2
862
Normal
-0.2
456
Normal
-0.3
384
Normal
-0.3
132
Normal
-0.3
112
Tumor
-0.3
136
Normal
-0.3
1032
Normal
-0.3
366
Normal
-0.3
671
Tumor
-0.3
926
Normal
-0.3
192
Normal
-0.3
564
Normal
-0.3
272
Normal
-0.3
314
Normal
-0.3
816
Normal
-0.3
267
Tumor
-0.3
413
Tumor
-0.3
1046
Normal
-0.3
278
Normal
-0.3
744
Normal
-0.3
574
Normal
-0.3
1042
Normal
-0.3
967
Tumor
-0.3
955
Tumor
-0.4
298
Normal
-0.4
312
Normal
-0.4
858
Normal
-0.4
857
Tumor
-0.4
196
Normal
-0.4
824
Normal
-0.4
222
Normal
-0.4
852
Normal
-0.4
332
Normal
-0.4
635
Tumor
-0.4
818
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
