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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
42.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
29.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
231
Samples
Sample
Description
TPM
DO45213
0 years, male, NA, stage:1, alive, 1200 days
84.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
74.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
58.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
35.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
2.0
965
Tumor
1.7
497
Tumor
1.5
743
Tumor
1.5
313
Tumor
1.4
957
Tumor
1.4
411
Tumor
1.2
1013
Tumor
1.1
865
Tumor
1.1
351
Tumor
1.0
921
Tumor
1.0
695
Tumor
1.0
877
Tumor
1.0
727
Tumor
1.0
487
Tumor
0.9
413
Tumor
0.9
663
Tumor
0.9
923
Tumor
0.9
671
Tumor
0.9
355
Tumor
0.8
425
Tumor
0.8
813
Tumor
0.8
477
Tumor
0.8
131
Tumor
0.8
112
Tumor
0.8
545
Tumor
0.8
277
Tumor
0.8
517
Tumor
0.8
641
Tumor
0.8
523
Tumor
0.7
537
Tumor
0.7
943
Tumor
0.7
341
Tumor
0.7
661
Tumor
0.7
951
Tumor
0.7
471
Tumor
0.7
135
Tumor
0.7
357
Tumor
0.6
375
Tumor
0.6
745
Tumor
0.6
665
Tumor
0.6
443
Tumor
0.6
1025
Tumor
0.6
385
Tumor
0.6
343
Tumor
0.6
1021
Tumor
0.6
285
Tumor
0.6
161
Tumor
0.6
431
Tumor
0.6
983
Tumor
0.6
1031
Tumor
0.6
467
Tumor
0.6
635
Tumor
0.5
127
Tumor
0.5
297
Tumor
0.5
493
Tumor
0.5
391
Tumor
0.5
737
Tumor
0.5
231
Tumor
0.4
527
Tumor
0.4
571
Tumor
0.4
433
Tumor
0.4
937
Tumor
0.4
211
Tumor
0.4
977
Tumor
0.4
123
Tumor
0.4
814
Normal
0.4
873
Tumor
0.3
567
Tumor
0.3
393
Tumor
0.3
815
Tumor
0.3
331
Tumor
0.3
271
Tumor
0.3
227
Tumor
0.3
427
Tumor
0.3
367
Tumor
0.3
535
Tumor
0.3
1043
Tumor
0.3
817
Tumor
0.3
953
Tumor
0.3
647
Tumor
0.3
925
Tumor
0.3
563
Tumor
0.2
1045
Tumor
0.2
445
Tumor
0.2
361
Tumor
0.2
715
Tumor
0.2
881
Tumor
0.2
573
Tumor
0.2
473
Tumor
0.2
267
Tumor
0.2
257
Tumor
0.2
724
Normal
0.2
963
Tumor
0.2
421
Tumor
0.2
435
Tumor
0.2
187
Tumor
0.2
463
Tumor
0.1
455
Tumor
0.1
171
Tumor
0.1
553
Tumor
0.1
513
Tumor
0.1
975
Tumor
0.1
223
Tumor
0.1
363
Tumor
0.1
1027
Tumor
0.1
423
Tumor
0.1
141
Tumor
0.1
213
Tumor
0.1
261
Tumor
0.1
145
Tumor
0.0
823
Tumor
0.0
383
Tumor
0.0
387
Tumor
0.0
697
Tumor
0.0
883
Tumor
0.0
125
Tumor
0.0
1041
Tumor
0.0
713
Tumor
0.0
755
Tumor
0.0
395
Tumor
0.0
533
Tumor
0.0
861
Tumor
-0.1
685
Tumor
-0.1
741
Tumor
-0.1
447
Tumor
-0.1
557
Tumor
-0.1
491
Tumor
-0.1
451
Tumor
-0.1
911
Tumor
-0.1
221
Tumor
-0.1
984
Normal
-0.1
863
Tumor
-0.1
465
Tumor
-0.1
283
Tumor
-0.1
353
Tumor
-0.1
365
Tumor
-0.1
867
Tumor
-0.2
483
Tumor
-0.2
981
Tumor
-0.2
1014
Normal
-0.2
113
Tumor
-0.2
515
Tumor
-0.2
913
Tumor
-0.2
498
Normal
-0.2
525
Tumor
-0.2
978
Normal
-0.2
415
Tumor
-0.3
966
Normal
-0.3
818
Normal
-0.3
191
Tumor
-0.3
851
Tumor
-0.3
924
Normal
-0.3
484
Normal
-0.3
278
Normal
-0.3
312
Normal
-0.3
721
Tumor
-0.3
311
Tumor
-0.3
858
Normal
-0.3
964
Normal
-0.3
524
Normal
-0.3
488
Normal
-0.3
714
Normal
-0.3
744
Normal
-0.3
915
Tumor
-0.3
857
Tumor
-0.3
298
Normal
-0.3
884
Normal
-0.3
785
Tumor
-0.3
494
Normal
-0.3
434
Normal
-0.3
912
Normal
-0.3
1032
Normal
-0.3
1015
Tumor
-0.3
534
Normal
-0.3
516
Normal
-0.3
546
Normal
-0.3
388
Normal
-0.3
314
Normal
-0.3
958
Normal
-0.3
137
Tumor
-0.3
878
Normal
-0.3
615
Tumor
-0.3
672
Normal
-0.3
538
Normal
-0.3
1042
Normal
-0.3
666
Normal
-0.3
364
Normal
-0.3
968
Normal
-0.3
777
Tumor
-0.3
1026
Normal
-0.3
617
Tumor
-0.4
354
Normal
-0.4
564
Normal
-0.4
662
Normal
-0.4
446
Normal
-0.4
627
Tumor
-0.4
472
Normal
-0.4
728
Normal
-0.4
481
Tumor
-0.4
376
Normal
-0.4
882
Normal
-0.4
478
Normal
-0.4
146
Normal
-0.4
416
Normal
-0.4
386
Normal
-0.4
868
Normal
-0.4
362
Normal
-0.4
332
Normal
-0.4
864
Normal
-0.4
352
Normal
-0.4
1016
Normal
-0.4
648
Normal
-0.4
922
Normal
-0.4
436
Normal
-0.4
147
Tumor
-0.4
412
Normal
-0.4
284
Normal
-0.4
746
Normal
-0.4
874
Normal
-0.4
664
Normal
-0.4
982
Normal
-0.4
554
Normal
-0.4
474
Normal
-0.4
852
Normal
-0.4
976
Normal
-0.4
138
Normal
-0.4
1022
Normal
-0.4
132
Normal
-0.4
344
Normal
-0.4
396
Normal
-0.4
394
Normal
-0.4
195
Tumor
-0.4
136
Normal
-0.4
464
Normal
-0.4
392
Normal
-0.4
384
Normal
-0.4
686
Normal
-0.4
111
Normal
-0.4
142
Normal
-0.4
756
Normal
-0.4
461
Tumor
-0.4
716
Normal
-0.4
327
Tumor
-0.4
192
Normal
-0.4
866
Normal
-0.4
723
Tumor
-0.4
492
Normal
-0.4
738
Normal
-0.4
482
Normal
-0.4
742
Normal
-0.4
918
Normal
-0.4
468
Normal
-0.4
462
Normal
-0.4
698
Normal
-0.4
366
Normal
-0.5
955
Tumor
-0.5
466
Normal
-0.5
356
Normal
-0.5
944
Normal
-0.5
572
Normal
-0.5
954
Normal
-0.5
916
Normal
-0.5
536
Normal
-0.5
328
Normal
-0.5
722
Normal
-0.5
224
Normal
-0.5
342
Normal
-0.5
1028
Normal
-0.5
862
Normal
-0.5
432
Normal
-0.5
914
Normal
-0.5
456
Normal
-0.5
926
Normal
-0.5
258
Normal
-0.5
938
Normal
-0.5
444
Normal
-0.5
528
Normal
-0.5
1046
Normal
-0.5
286
Normal
-0.5
268
Normal
-0.5
358
Normal
-0.5
128
Normal
-0.5
212
Normal
-0.5
628
Normal
-0.5
786
Normal
-0.5
1044
Normal
-0.5
185
Tumor
-0.5
574
Normal
-0.5
448
Normal
-0.5
217
Tumor
-0.5
568
Normal
-0.5
428
Normal
-0.5
514
Normal
-0.5
232
Normal
-0.5
368
Normal
-0.5
272
Normal
-0.5
262
Normal
-0.5
956
Normal
-0.5
228
Normal
-0.5
422
Normal
-0.5
426
Normal
-0.5
126
Normal
-0.5
618
Normal
-0.5
148
Normal
-0.5
816
Normal
-0.5
518
Normal
-0.5
778
Normal
-0.5
452
Normal
-0.5
526
Normal
-0.5
636
Normal
-0.5
696
Normal
-0.6
186
Normal
-0.6
952
Normal
-0.6
642
Normal
-0.6
616
Normal
-0.6
124
Normal
-0.6
114
Normal
-0.6
188
Normal
-0.6
414
Normal
-0.6
558
Normal
-0.6
424
Normal
-0.7
162
Normal
-0.7
824
Normal
-0.7
214
Normal
-0.7
196
Normal
-0.7
172
Normal
-0.7
222
Normal
-0.7
917
Tumor
-0.8
218
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
