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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VCL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
178.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
57.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VCL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
63.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
54.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
50.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
1.2
536
Normal
1.0
917
Tumor
0.9
498
Normal
0.9
958
Normal
0.9
478
Normal
0.9
538
Normal
0.8
444
Normal
0.8
916
Normal
0.7
672
Normal
0.6
311
Tumor
0.6
224
Normal
0.6
421
Tumor
0.6
852
Normal
0.6
982
Normal
0.6
124
Normal
0.5
516
Normal
0.5
572
Normal
0.5
344
Normal
0.5
448
Normal
0.5
492
Normal
0.5
185
Tumor
0.5
924
Normal
0.5
874
Normal
0.5
524
Normal
0.5
976
Normal
0.5
984
Normal
0.5
354
Normal
0.5
563
Tumor
0.5
386
Normal
0.5
364
Normal
0.4
1044
Normal
0.4
878
Normal
0.4
146
Normal
0.4
412
Normal
0.4
126
Normal
0.4
744
Normal
0.4
1028
Normal
0.4
816
Normal
0.4
1032
Normal
0.4
415
Tumor
0.4
384
Normal
0.4
786
Normal
0.4
528
Normal
0.4
212
Normal
0.4
823
Tumor
0.4
434
Normal
0.4
284
Normal
0.4
545
Tumor
0.4
214
Normal
0.4
642
Normal
0.3
881
Tumor
0.3
716
Normal
0.3
474
Normal
0.3
778
Normal
0.3
968
Normal
0.3
394
Normal
0.3
188
Normal
0.3
297
Tumor
0.3
952
Normal
0.3
866
Normal
0.3
352
Normal
0.3
954
Normal
0.3
943
Tumor
0.3
455
Tumor
0.3
416
Normal
0.3
884
Normal
0.3
922
Normal
0.3
818
Normal
0.3
268
Normal
0.3
328
Normal
0.3
223
Tumor
0.3
546
Normal
0.3
472
Normal
0.3
138
Normal
0.3
882
Normal
0.3
785
Tumor
0.3
228
Normal
0.3
956
Normal
0.3
312
Normal
0.2
362
Normal
0.2
1042
Normal
0.2
686
Normal
0.2
918
Normal
0.2
368
Normal
0.2
723
Tumor
0.2
574
Normal
0.2
355
Tumor
0.2
685
Tumor
0.2
636
Normal
0.2
554
Normal
0.2
558
Normal
0.2
142
Normal
0.2
488
Normal
0.2
553
Tumor
0.2
514
Normal
0.2
218
Normal
0.2
868
Normal
0.2
1022
Normal
0.2
1045
Tumor
0.2
938
Normal
0.2
975
Tumor
0.2
698
Normal
0.2
666
Normal
0.2
814
Normal
0.2
963
Tumor
0.2
944
Normal
0.2
422
Normal
0.2
396
Normal
0.2
283
Tumor
0.2
447
Tumor
0.1
388
Normal
0.1
392
Normal
0.1
738
Normal
0.1
424
Normal
0.1
628
Normal
0.1
298
Normal
0.1
964
Normal
0.1
162
Normal
0.1
196
Normal
0.1
864
Normal
0.1
356
Normal
0.1
136
Normal
0.1
468
Normal
0.1
494
Normal
0.1
534
Normal
0.1
414
Normal
0.1
526
Normal
0.1
332
Normal
0.1
342
Normal
0.1
195
Tumor
0.1
483
Tumor
0.1
616
Normal
0.1
484
Normal
0.1
978
Normal
0.1
211
Tumor
0.1
148
Normal
0.1
817
Tumor
0.1
376
Normal
0.1
456
Normal
0.1
696
Normal
0.1
664
Normal
0.1
568
Normal
0.1
1014
Normal
0.1
697
Tumor
0.1
432
Normal
0.1
857
Tumor
0.1
746
Normal
0.1
462
Normal
0.1
722
Normal
0.1
662
Normal
0.1
618
Normal
0.0
232
Normal
0.0
272
Normal
0.0
278
Normal
0.0
482
Normal
0.0
383
Tumor
0.0
721
Tumor
0.0
464
Normal
0.0
824
Normal
0.0
466
Normal
0.0
314
Normal
0.0
428
Normal
0.0
714
Normal
0.0
327
Tumor
0.0
745
Tumor
0.0
756
Normal
0.0
742
Normal
0.0
966
Normal
0.0
518
Normal
0.0
426
Normal
0.0
446
Normal
0.0
147
Tumor
0.0
222
Normal
0.0
461
Tumor
0.0
366
Normal
0.0
172
Normal
0.0
926
Normal
0.0
262
Normal
N/A
728
Normal
0.0
1026
Normal
0.0
186
Normal
0.0
493
Tumor
0.0
141
Tumor
0.0
955
Tumor
0.0
111
Normal
0.0
671
Tumor
0.0
921
Tumor
0.0
525
Tumor
0.0
286
Normal
0.0
862
Normal
0.0
715
Tumor
0.0
535
Tumor
0.0
813
Tumor
0.0
145
Tumor
-0.1
436
Normal
-0.1
627
Tumor
-0.1
191
Tumor
-0.1
564
Normal
-0.1
132
Normal
-0.1
912
Normal
-0.1
213
Tumor
-0.1
1016
Normal
-0.1
375
Tumor
-0.1
1046
Normal
-0.1
187
Tumor
-0.1
363
Tumor
-0.1
491
Tumor
-0.1
867
Tumor
-0.1
923
Tumor
-0.1
913
Tumor
-0.1
433
Tumor
-0.1
914
Normal
-0.1
523
Tumor
-0.1
385
Tumor
-0.1
128
Normal
-0.1
858
Normal
-0.1
277
Tumor
-0.1
515
Tumor
-0.1
343
Tumor
-0.1
467
Tumor
-0.1
883
Tumor
-0.1
161
Tumor
-0.1
648
Normal
-0.1
365
Tumor
-0.2
615
Tumor
-0.2
641
Tumor
-0.2
1025
Tumor
-0.2
271
Tumor
-0.2
114
Normal
-0.2
695
Tumor
-0.2
258
Normal
-0.2
452
Normal
-0.2
413
Tumor
-0.2
137
Tumor
-0.2
425
Tumor
-0.2
358
Normal
-0.2
361
Tumor
-0.2
647
Tumor
-0.3
537
Tumor
-0.3
427
Tumor
-0.3
737
Tumor
-0.3
217
Tumor
-0.3
481
Tumor
-0.3
617
Tumor
-0.3
471
Tumor
-0.3
1015
Tumor
-0.3
863
Tumor
-0.3
395
Tumor
-0.3
423
Tumor
-0.3
925
Tumor
-0.3
353
Tumor
-0.3
473
Tumor
-0.3
1027
Tumor
-0.3
873
Tumor
-0.3
125
Tumor
-0.3
953
Tumor
-0.3
171
Tumor
-0.3
135
Tumor
-0.3
431
Tumor
-0.3
231
Tumor
-0.4
257
Tumor
-0.4
497
Tumor
-0.4
1031
Tumor
-0.4
713
Tumor
-0.4
131
Tumor
-0.4
463
Tumor
-0.4
567
Tumor
-0.4
727
Tumor
-0.4
527
Tumor
-0.4
981
Tumor
-0.4
513
Tumor
-0.4
977
Tumor
-0.4
227
Tumor
-0.5
341
Tumor
-0.5
367
Tumor
-0.5
915
Tumor
-0.5
755
Tumor
-0.5
351
Tumor
-0.5
777
Tumor
-0.5
661
Tumor
-0.5
127
Tumor
-0.5
435
Tumor
-0.5
465
Tumor
-0.5
983
Tumor
-0.5
557
Tumor
-0.5
221
Tumor
-0.5
851
Tumor
-0.5
331
Tumor
-0.5
387
Tumor
-0.5
477
Tumor
-0.5
965
Tumor
-0.6
533
Tumor
-0.6
411
Tumor
-0.6
391
Tumor
-0.6
877
Tumor
-0.6
665
Tumor
-0.6
741
Tumor
-0.6
861
Tumor
-0.6
635
Tumor
-0.6
261
Tumor
-0.6
113
Tumor
-0.6
1043
Tumor
-0.6
445
Tumor
-0.7
937
Tumor
-0.7
517
Tumor
-0.7
393
Tumor
-0.7
357
Tumor
-0.7
957
Tumor
-0.7
313
Tumor
-0.7
967
Tumor
-0.8
663
Tumor
-0.8
815
Tumor
-0.8
573
Tumor
-0.8
571
Tumor
-0.8
451
Tumor
-0.8
267
Tumor
-0.8
487
Tumor
-0.8
911
Tumor
-0.8
1021
Tumor
-0.8
443
Tumor
-0.9
1013
Tumor
-0.9
285
Tumor
-0.9
865
Tumor
-0.9
743
Tumor
-0.9
724
Normal
-0.9
1041
Tumor
-1.0
112
Tumor
-1.0
123
Tumor
-1.0
951
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
